Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABNP42_RS20235 Genome accession   NZ_CP157868
Coordinates   3902954..3903361 (-) Length   135 a.a.
NCBI ID   WP_131887510.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3897954..3908361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS20195 (ABNP42_20165) csrA 3898004..3898243 (-) 240 WP_131887504.1 carbon storage regulator CsrA -
  ABNP42_RS20200 (ABNP42_20170) fliW 3898257..3898685 (-) 429 WP_131887505.1 flagellar assembly protein FliW -
  ABNP42_RS20205 (ABNP42_20175) - 3898689..3899105 (-) 417 WP_131887506.1 DUF6470 family protein -
  ABNP42_RS20210 (ABNP42_20180) flgL 3899150..3900031 (-) 882 WP_131887507.1 flagellar hook-associated protein FlgL -
  ABNP42_RS20215 (ABNP42_20185) flgK 3900034..3901548 (-) 1515 WP_131887508.1 flagellar hook-associated protein FlgK -
  ABNP42_RS20220 (ABNP42_20190) - 3901569..3902009 (-) 441 WP_094911075.1 flagellar protein FlgN -
  ABNP42_RS20225 (ABNP42_20195) flgM 3902025..3902282 (-) 258 WP_210610820.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABNP42_RS20230 (ABNP42_20200) - 3902495..3902896 (-) 402 WP_131887509.1 TIGR03826 family flagellar region protein -
  ABNP42_RS20235 (ABNP42_20205) comFC 3902954..3903361 (-) 408 WP_131887510.1 ComF family protein Machinery gene
  ABNP42_RS20240 (ABNP42_20210) comFA 3903646..3905127 (-) 1482 WP_350019685.1 DEAD/DEAH box helicase Machinery gene
  ABNP42_RS20245 (ABNP42_20215) - 3905219..3906064 (-) 846 WP_131887512.1 DegV family protein -
  ABNP42_RS20250 (ABNP42_20220) - 3906181..3906618 (-) 438 WP_330988088.1 YaaR family protein -
  ABNP42_RS20255 (ABNP42_20225) - 3906700..3907521 (-) 822 WP_131887514.1 flagellin -
  ABNP42_RS20260 (ABNP42_20230) - 3907537..3907962 (-) 426 WP_286175379.1 flagellar export chaperone FliS -
  ABNP42_RS20265 (ABNP42_20235) - 3908010..3908315 (-) 306 WP_131887515.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15708.15 Da        Isoelectric Point: 8.0285

>NTDB_id=1008595 ABNP42_RS20235 WP_131887510.1 3902954..3903361(-) (comFC) [Priestia flexa strain Antcr29]
MFKYRGDYELHKIFTDDFAQLYKVYSPENPLLVPIPLSKERMYERGFNQAEALASLLPAEVAYPLTRKHTEKQAKKTREE
RLQNHRVFELVEPALVTKRNVILIDDLYTTGVTLHEAALCLKDVAAAIYSFTIYR

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1008595 ABNP42_RS20235 WP_131887510.1 3902954..3903361(-) (comFC) [Priestia flexa strain Antcr29]
TTGTTTAAATACCGGGGTGACTACGAACTTCATAAAATATTTACTGACGATTTCGCTCAGCTTTATAAGGTATATAGTCC
CGAGAATCCCTTACTGGTTCCCATCCCTTTAAGCAAGGAACGAATGTATGAACGAGGGTTTAATCAAGCGGAAGCGTTGG
CATCTTTACTCCCGGCAGAAGTAGCTTACCCTCTTACTCGTAAGCATACGGAGAAACAAGCGAAGAAAACGAGAGAAGAA
AGGCTACAAAACCATAGGGTGTTTGAGCTTGTGGAGCCAGCGCTGGTTACAAAAAGAAACGTCATTTTAATTGATGATTT
GTACACAACGGGCGTTACGTTACACGAAGCAGCGCTTTGTCTAAAAGATGTGGCGGCAGCAATCTATTCTTTTACAATTT
ACCGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

50.365

100

0.511
  comFC Latilactobacillus sakei subsp. sakei 23K

37.324

100

0.393
  comFC Lactococcus lactis subsp. cremoris KW2

37.5

100

0.378

Multiple sequence alignment