Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | QCC38_RS08855 | Genome accession | NZ_CP157866 |
| Coordinates | 1851452..1851832 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain SCCH68:Ab991128 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1846452..1856832
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCC38_RS08825 (QCC38_008825) | kdsB | 1847355..1848116 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| QCC38_RS08830 (QCC38_008830) | - | 1848128..1849108 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| QCC38_RS08835 (QCC38_008835) | - | 1849120..1849461 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| QCC38_RS08840 (QCC38_008840) | - | 1849479..1850252 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| QCC38_RS08845 (QCC38_008845) | - | 1850290..1850898 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| QCC38_RS08850 (QCC38_008850) | - | 1850908..1851462 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| QCC38_RS08855 (QCC38_008855) | xcpV | 1851452..1851832 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| QCC38_RS08860 (QCC38_008860) | xcpW | 1851832..1852533 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| QCC38_RS08865 (QCC38_008865) | gspK | 1852533..1853492 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| QCC38_RS08870 (QCC38_008870) | - | 1853723..1854319 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| QCC38_RS08875 (QCC38_008875) | ung | 1854370..1855083 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| QCC38_RS08880 (QCC38_008880) | - | 1855080..1856204 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| QCC38_RS08885 (QCC38_008885) | tadA | 1856211..1856714 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=1008527 QCC38_RS08855 WP_000836911.1 1851452..1851832(+) (xcpV) [Acinetobacter baumannii strain SCCH68:Ab991128]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1008527 QCC38_RS08855 WP_000836911.1 1851452..1851832(+) (xcpV) [Acinetobacter baumannii strain SCCH68:Ab991128]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |