Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABM478_RS21515 Genome accession   NZ_CP157848
Coordinates   4202041..4203084 (-) Length   347 a.a.
NCBI ID   WP_001013170.1    Uniprot ID   A0A9Q5QS48
Organism   Bacillus cereus strain B9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4197041..4208084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABM478_RS21470 - 4197474..4197674 (-) 201 WP_000106083.1 YqzE family protein -
  ABM478_RS21475 - 4197713..4198210 (-) 498 WP_000836660.1 shikimate kinase -
  ABM478_RS21480 - 4198326..4198976 (-) 651 WP_000183856.1 2OG-Fe(II) oxygenase -
  ABM478_RS21485 comGG 4199151..4199522 (-) 372 WP_001231317.1 competence type IV pilus minor pilin ComGG -
  ABM478_RS21490 comGF 4199519..4199989 (-) 471 WP_000923101.1 competence type IV pilus minor pilin ComGF -
  ABM478_RS21495 - 4199959..4200261 (-) 303 WP_000829469.1 hypothetical protein -
  ABM478_RS21500 comGD 4200254..4200709 (-) 456 WP_000813141.1 competence type IV pilus minor pilin ComGD -
  ABM478_RS21505 comGC 4200706..4201005 (-) 300 WP_001178687.1 competence type IV pilus major pilin ComGC -
  ABM478_RS21510 comGB 4201017..4202048 (-) 1032 WP_000475187.1 competence type IV pilus assembly protein ComGB -
  ABM478_RS21515 comGA 4202041..4203084 (-) 1044 WP_001013170.1 competence type IV pilus ATPase ComGA Machinery gene
  ABM478_RS21520 - 4203290..4203985 (+) 696 WP_000434125.1 helix-turn-helix domain-containing protein -
  ABM478_RS21525 - 4204111..4204353 (+) 243 WP_000440716.1 DUF2626 domain-containing protein -
  ABM478_RS21530 - 4204461..4205855 (+) 1395 WP_001094345.1 L-cystine transporter -
  ABM478_RS21535 - 4205934..4206326 (-) 393 WP_000875395.1 hypothetical protein -
  ABM478_RS21540 - 4206414..4206629 (-) 216 WP_001008327.1 DUF3912 family protein -
  ABM478_RS21545 - 4206882..4207193 (+) 312 WP_001093239.1 hypothetical protein -
  ABM478_RS21550 - 4207228..4207716 (-) 489 WP_000764267.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39095.50 Da        Isoelectric Point: 8.7212

>NTDB_id=1008486 ABM478_RS21515 WP_001013170.1 4202041..4203084(-) (comGA) [Bacillus cereus strain B9]
MNGIEIFANAILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEAGGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1008486 ABM478_RS21515 WP_001013170.1 4202041..4203084(-) (comGA) [Bacillus cereus strain B9]
ATGAATGGGATTGAAATTTTTGCGAATGCAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTCAAATTTTTAGCATCTATGGACATAGGCGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTTGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGCGATGAAGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACACTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGCTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAGGCTAGCATATATGAGCTACTATATGGATATGAGTTAAAACAAGCGCTTAAAGAAGCTGGTGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.908

100

0.559
  pilB Haemophilus influenzae 86-028NP

40.062

92.795

0.372

Multiple sequence alignment