Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   UXR36_RS02670 Genome accession   NZ_CP157773
Coordinates   560157..560726 (+) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN89     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 555157..565726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR36_RS02645 (UXR36_002645) cysE 556370..557017 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  UXR36_RS02650 (UXR36_002650) cysS 557001..558401 (+) 1401 WP_000631980.1 cysteine--tRNA ligase -
  UXR36_RS02655 (UXR36_002655) - 558394..558798 (+) 405 WP_000370179.1 Mini-ribonuclease 3 -
  UXR36_RS02660 (UXR36_002660) rlmB 558806..559552 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  UXR36_RS02665 (UXR36_002665) - 559552..560076 (+) 525 WP_000664731.1 NYN domain-containing protein -
  UXR36_RS02670 (UXR36_002670) sigH 560157..560726 (+) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  UXR36_RS02675 (UXR36_002675) rpmG 560841..560984 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  UXR36_RS02680 (UXR36_002680) secE 561040..561222 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  UXR36_RS02685 (UXR36_002685) nusG 561235..561783 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  UXR36_RS02690 (UXR36_002690) rplK 561964..562386 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  UXR36_RS02695 (UXR36_002695) rplA 562594..563286 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  UXR36_RS02700 (UXR36_002700) rplJ 563558..564058 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  UXR36_RS02705 (UXR36_002705) rplL 564101..564469 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  UXR36_RS02710 (UXR36_002710) - 564644..565252 (+) 609 WP_000020295.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=1008248 UXR36_RS02670 WP_000872878.1 560157..560726(+) (sigH) [Staphylococcus aureus strain BSN89]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1008248 UXR36_RS02670 WP_000872878.1 560157..560726(+) (sigH) [Staphylococcus aureus strain BSN89]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment