Detailed information NTG1008086

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABMQ32_RS21125
• Genome accession: NZ_CP157738
• Coordinates: 4290325..4291125 (+)
• Length: 266 a.a.
• NCBI ID: WP_071081184.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KPN0422
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4285325..4296125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABMQ32_RS21090 (ABMQ32_21090)	gspH	4285481..4285996 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
ABMQ32_RS21095 (ABMQ32_21095)	gspI	4285993..4286358 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ABMQ32_RS21100 (ABMQ32_21100)	gspJ	4286355..4286951 (+)	597	WP_071081183.1	type II secretion system minor pseudopilin GspJ	-
ABMQ32_RS21105 (ABMQ32_21105)	gspK	4286948..4287934 (+)	987	WP_077270338.1	type II secretion system minor pseudopilin GspK	-
ABMQ32_RS21110 (ABMQ32_21110)	gspL	4287921..4289114 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ABMQ32_RS21115 (ABMQ32_21115)	-	4289107..4289592 (+)	486	WP_004151943.1	type II secretion system protein M	-
ABMQ32_RS21120 (ABMQ32_21120)	-	4289582..4290328 (+)	747	WP_023316460.1	type II secretion system protein N	-
ABMQ32_RS21125 (ABMQ32_21125)	pilD	4290325..4291125 (+)	801	WP_071081184.1	A24 family peptidase	Machinery gene
ABMQ32_RS21130 (ABMQ32_21130)	hrpB	4291173..4293602 (-)	2430	WP_023282188.1	ATP-dependent helicase HrpB	-
ABMQ32_RS21135 (ABMQ32_21135)	thpR	4293675..4294211 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ABMQ32_RS21140 (ABMQ32_21140)	sfsA	4294211..4294927 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ABMQ32_RS21145 (ABMQ32_21145)	dksA	4295090..4295545 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.98 Da
• Isoelectric Point: 8.8894

>NTDB_id=1008086 ABMQ32_RS21125 WP_071081184.1 4290325..4291125(+) (pilD) [Klebsiella pneumoniae strain KPN0422]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQQLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1008086 ABMQ32_RS21125 WP_071081184.1 4290325..4291125(+) (pilD) [Klebsiella pneumoniae strain KPN0422]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCAGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425