Detailed information NTG1008047

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABLV49_RS04185
• Genome accession: NZ_CP157675
• Coordinates: 864699..866126 (-)
• Length: 475 a.a.
• NCBI ID: WP_349280332.1
• Uniprot ID: -
• Organism: Polaromonas hydrogenivorans strain DSM 17735
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 859699..871126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLV49_RS04175 (ABLV49_04175)	-	860798..863701 (-)	2904	WP_349280330.1	ribonucleoside-diphosphate reductase subunit alpha	-
ABLV49_RS04180 (ABLV49_04180)	ampD	864110..864712 (-)	603	WP_349280331.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ABLV49_RS04185 (ABLV49_04185)	pilR	864699..866126 (-)	1428	WP_349280332.1	sigma-54 dependent transcriptional regulator	Regulator
ABLV49_RS04190 (ABLV49_04190)	-	866133..867851 (-)	1719	WP_349280333.1	ATP-binding protein	-
ABLV49_RS04195 (ABLV49_04195)	-	867848..868093 (-)	246	WP_349280334.1	PP0621 family protein	-
ABLV49_RS04200 (ABLV49_04200)	ccsA	868090..868890 (-)	801	WP_349280335.1	cytochrome c biogenesis protein CcsA	-
ABLV49_RS04205 (ABLV49_04205)	ffh	868967..870325 (+)	1359	WP_011802747.1	signal recognition particle protein	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 51498.09 Da
• Isoelectric Point: 6.0775

>NTDB_id=1008047 ABLV49_RS04185 WP_349280332.1 864699..866126(-) (pilR) [Polaromonas hydrogenivorans strain DSM 17735]
MNPQAPALLPARILIIDDEPDLRTLYELTLLRQGYRVEAAGDLQQAREHLKAQRFDAVITDMRLPDGLGLELLRDLAAQH
RSERCVVITAHGSAENAVEALKAGAFDYLTKPVDLKQFRSVVASAIQETTNLGVALPKGEARMAMAGPGKPADAATMLQK
LVGESPVMRAVKSRIVKVAGSMAPVLIRGESGTGKELVARAVHGCSHRAASPFVAVNCSAIPENLLEAEFFGARKGAYTG
SSQDRQGYFQAAKGGTLFLDEIGDLPLAMQSKLLRAIQERTVRSLGSPQEETVDVRIVSATHKDLAAGVEAGTFRQDLYY
RLNVIEVVVPPLRERLDDLPALCSALLARICNESGLDMPVLSPAVIAQLRSLPLNGNVRELENILHRAVALGEDSLLHLD
APPEEVVVVPENLQNFLDQQERSILTKVLQETGFNRTAAATRLGLSLRQIRYRIARLGITTPGHDDAAETLDDFA

Nucleotide

• Length: 1428 bp

>NTDB_id=1008047 ABLV49_RS04185 WP_349280332.1 864699..866126(-) (pilR) [Polaromonas hydrogenivorans strain DSM 17735]
ATGAATCCGCAAGCACCTGCATTACTACCTGCCCGCATCCTGATCATTGATGACGAGCCGGACCTGCGCACCCTGTACGA
GCTGACCCTGCTGCGGCAAGGCTACCGGGTCGAGGCGGCCGGCGACCTGCAGCAGGCGCGCGAACACCTCAAGGCGCAGC
GTTTTGATGCCGTCATCACCGACATGCGCCTGCCCGACGGGCTGGGGCTGGAACTGCTGCGCGACCTGGCGGCACAGCAC
CGTTCGGAGCGCTGCGTGGTCATCACGGCCCATGGCTCGGCCGAAAATGCGGTGGAGGCGCTCAAGGCAGGCGCGTTTGA
CTACCTGACCAAGCCGGTTGACCTCAAGCAGTTTCGAAGTGTCGTGGCCTCGGCCATACAGGAAACCACCAATCTCGGTG
TGGCTCTGCCGAAGGGCGAAGCCCGCATGGCGATGGCCGGCCCTGGCAAACCGGCCGATGCCGCAACCATGCTGCAAAAG
CTGGTCGGCGAATCGCCCGTGATGCGGGCCGTGAAGTCGCGCATCGTCAAGGTGGCCGGCAGCATGGCGCCGGTGCTGAT
ACGCGGCGAGTCCGGCACCGGCAAGGAACTGGTGGCGCGCGCCGTGCATGGCTGCAGCCACCGCGCGGCCAGCCCGTTCG
TGGCGGTCAACTGCAGTGCGATTCCCGAAAACCTGCTCGAAGCCGAATTCTTTGGCGCACGCAAAGGCGCTTACACCGGC
TCCAGCCAGGACCGGCAGGGCTATTTTCAGGCGGCCAAGGGCGGCACGCTGTTTCTTGACGAGATTGGCGACTTGCCGCT
GGCCATGCAGTCCAAGCTGCTGCGGGCCATCCAGGAGCGCACCGTGCGCTCGCTGGGCTCGCCGCAGGAAGAAACCGTCG
ATGTGCGCATCGTCAGCGCCACCCACAAGGACTTGGCGGCAGGCGTCGAGGCGGGTACCTTTCGCCAGGATTTGTACTAC
CGGCTCAATGTGATCGAGGTCGTGGTGCCGCCGCTGCGCGAGCGGCTTGACGACCTGCCGGCACTATGCAGTGCCCTGCT
GGCAAGAATTTGCAATGAGTCTGGCCTGGACATGCCCGTGCTGAGCCCGGCGGTGATCGCGCAGCTGCGTTCGCTGCCCC
TCAACGGCAATGTCCGCGAACTGGAGAACATCCTGCACCGTGCCGTCGCCCTGGGCGAAGACAGCCTGCTGCACCTTGAT
GCACCGCCCGAGGAGGTGGTGGTGGTTCCCGAAAATCTGCAAAATTTCCTGGACCAGCAGGAGCGAAGCATCCTGACCAA
GGTGCTGCAGGAAACCGGCTTCAACCGCACGGCCGCAGCCACCCGGCTGGGCCTGAGCCTGCGCCAGATCCGCTACCGTA
TTGCGCGTCTGGGAATCACGACACCCGGCCATGACGATGCGGCCGAGACCCTTGATGACTTTGCCTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (417-456)

• Sigma-54 interaction domain (Sigma54_activat) (161-327)

• Response regulator receiver domain (Response_reg) (13-122)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.98	96.632	0.493
pilR	Acinetobacter baumannii strain A118	39.286	100	0.394