Detailed information NTG1007877

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL846_RS21975
• Genome accession: NZ_CP157632
• Coordinates: 4592598..4593839 (+)
• Length: 413 a.a.
• NCBI ID: WP_418146025.1
• Uniprot ID: -
• Organism: Variovorax paradoxus strain 295MFChir4.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4587598..4598839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL846_RS21955 (ABL846_21940)	-	4588088..4588723 (-)	636	WP_015867140.1	LysE/ArgO family amino acid transporter	-
ABL846_RS21960 (ABL846_21945)	-	4588805..4589722 (+)	918	WP_418146019.1	LysR family transcriptional regulator ArgP	-
ABL846_RS21965 (ABL846_21950)	-	4589747..4591093 (-)	1347	WP_418146021.1	M16 family metallopeptidase	-
ABL846_RS21970 (ABL846_21955)	-	4591111..4592568 (-)	1458	WP_418146023.1	M16 family metallopeptidase	-
ABL846_RS21975 (ABL846_21960)	pilA	4592598..4593839 (+)	1242	WP_418146025.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL846_RS21980 (ABL846_21965)	-	4593864..4594901 (-)	1038	WP_418146026.1	hypothetical protein	-
ABL846_RS21985 (ABL846_21970)	-	4595051..4596829 (-)	1779	WP_418146027.1	ATP-binding protein	-
ABL846_RS21990 (ABL846_21975)	-	4596840..4597553 (-)	714	WP_062366006.1	response regulator	-
ABL846_RS21995 (ABL846_21980)	-	4597721..4598185 (+)	465	WP_418146028.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 42806.39 Da
• Isoelectric Point: 5.3229

>NTDB_id=1007877 ABL846_RS21975 WP_418146025.1 4592598..4593839(+) (pilA) [Variovorax paradoxus strain 295MFChir4.1]
MFSFFKKKPPAESPAAPAPSPAAEPAPAPEPAPAPAAAPARSVFSPSSWFGSKPAAEEAAPPPAAPDTAPPVVPPPPPPA
AANLAPVPAAPAPAPAVPAVPPPPPALVEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLMADA
GVKATEYLLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLASE
GASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIK
RVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLE
TFNAREFALALLG

Nucleotide

• Length: 1242 bp

>NTDB_id=1007877 ABL846_RS21975 WP_418146025.1 4592598..4593839(+) (pilA) [Variovorax paradoxus strain 295MFChir4.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCACCGGCCGCCGAGCCGGCCCC
TGCGCCCGAACCCGCGCCTGCGCCCGCTGCCGCACCCGCGCGTTCGGTGTTCTCTCCGTCGAGCTGGTTCGGTTCGAAGC
CTGCCGCGGAGGAAGCGGCGCCTCCGCCTGCAGCCCCAGACACGGCGCCCCCGGTTGTGCCTCCTCCGCCGCCACCCGCG
GCCGCGAACCTCGCCCCTGTGCCTGCAGCACCGGCGCCCGCGCCTGCCGTTCCGGCCGTGCCCCCGCCCCCACCCGCCCT
CGTCGAGGCCGCCATGCCCGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCA
TCCAGGCCGTGTTCGTCAACGCGCAGATCGACGAAGCGCTGTACGAGGAGCTCGAATCGGCCCTGCTGATGGCCGATGCC
GGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTCAAGCGCCAGATGGCGACCGATGCGGCGCAAGT
GAAGCGGCTGCTGGCCGATGCCATCACCGACCTGCTCCAGCCGCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACGCCGA
CGGTGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTGGCCAGCGAA
GGCGCCTCGGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAA
CACGGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCAGTCACGGCCGGCAAGGCGCGCG
GCAAGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGTTGCACCTGATGGACGAGCTCAAGAAGATCAAG
CGCGTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCAGAACGCCCT
GGCGCAGGTCCGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACCGCCAAGGGTG
GCGTGCTCTGCGCCATTGCGCGCGAGCGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTCGAG
ACCTTCAACGCGCGCGAGTTCGCGCTGGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (131-194)

• SRP54-type protein, GTPase domain (SRP54) (213-412)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	49.412	100	0.508