Detailed information NTG1007821

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL837_RS21490
• Genome accession: NZ_CP157626
• Coordinates: 4534513..4535763 (+)
• Length: 416 a.a.
• NCBI ID: WP_081247617.1
• Uniprot ID: -
• Organism: Variovorax paradoxus NBRC 15149
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4529513..4540763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL837_RS21470 (ABL837_21445)	-	4530003..4530638 (-)	636	WP_062365530.1	LysE/ArgO family amino acid transporter	-
ABL837_RS21475 (ABL837_21450)	-	4530720..4531637 (+)	918	WP_062365529.1	LysR family transcriptional regulator ArgP	-
ABL837_RS21480 (ABL837_21455)	-	4531662..4533008 (-)	1347	WP_062365528.1	M16 family metallopeptidase	-
ABL837_RS21485 (ABL837_21460)	-	4533026..4534483 (-)	1458	WP_374987734.1	M16 family metallopeptidase	-
ABL837_RS21490 (ABL837_21465)	pilA	4534513..4535763 (+)	1251	WP_081247617.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL837_RS21495 (ABL837_21470)	-	4535788..4536813 (-)	1026	WP_062365525.1	hypothetical protein	-
ABL837_RS21500 (ABL837_21475)	-	4536963..4538741 (-)	1779	WP_062365524.1	hybrid sensor histidine kinase/response regulator	-
ABL837_RS21505 (ABL837_21480)	-	4538752..4539465 (-)	714	WP_062366006.1	response regulator	-
ABL837_RS21510 (ABL837_21485)	-	4539633..4540097 (+)	465	WP_062365523.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 416 a.a.
• Molecular weight: 42994.66 Da
• Isoelectric Point: 5.3267

>NTDB_id=1007821 ABL837_RS21490 WP_081247617.1 4534513..4535763(+) (pilA) [Variovorax paradoxus NBRC 15149]
MFSFFKKKPPAEAPAAPAPSPAAEPAPAPEPAPEPAAAPARSVFSPSSWFGSKPAAEEAAPPPAAPPVAPPPPPPAVAPP
AAPVPAPAPAPAPAPAPAPAPVPAPAPAVLIEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLM
ADAGVKATEYLLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHL
ASEGASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELK
KIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLE
DLETFNAREFALALLG

Nucleotide

• Length: 1251 bp

>NTDB_id=1007821 ABL837_RS21490 WP_081247617.1 4534513..4535763(+) (pilA) [Variovorax paradoxus NBRC 15149]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAAGCCCCGGCCGCGCCGGCGCCCTCACCGGCCGCCGAGCCGGCCCC
TGCGCCCGAGCCCGCGCCTGAGCCCGCTGCCGCACCCGCGCGCTCGGTGTTCTCTCCGTCGAGCTGGTTCGGCTCGAAGC
CTGCCGCGGAGGAAGCGGCGCCTCCGCCTGCAGCGCCCCCGGTGGCGCCTCCTCCGCCGCCACCCGCGGTTGCGCCACCC
GCCGCACCCGTGCCTGCACCAGCACCAGCACCAGCACCAGCACCTGCACCTGCACCTGCGCCGGTGCCCGCTCCCGCTCC
CGCCGTCCTCATCGAAGCCGCCATGCCCGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCG
GCACCGGCATCCAGGCCGTGTTCGTCAACGCGCAGATCGACGAAGCGCTGTACGAGGAGCTCGAATCGGCTCTGCTGATG
GCCGATGCCGGCGTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTCAAGCGCCAGATGGCAACCGATGC
GGCGCAAGTGAAACGGCTGCTGGCCGATGCCATCACCGACCTGCTCCAGCCGCTCGAAAAACCGCTGGTGATCGGCCAGT
TCACGCCGACGGTGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTG
GCCAGCGAAGGCGCCTCAGTGCTGCTGGCCGCGGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGCTGCTGGTCTGGGC
CGACCGCAACACGGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCAGTCACGGCCGGCA
AGGCGCGCGGCAAGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAG
AAGATCAAGCGCGTTGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCA
GAACGCCCTGGCGCAGGTCCGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACGG
CCAAGGGCGGCGTGCTCTGCGCCATTGCGCGCGAGCGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAA
GACCTCGAGACCTTCAACGCGCGCGAGTTCGCGCTGGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (216-415)

• SRP54-type protein, helical bundle domain (SRP54_N) (134-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.471	100	0.495