Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABL838_RS02970 Genome accession   NZ_CP157624
Coordinates   675395..677008 (+) Length   537 a.a.
NCBI ID   WP_418124073.1    Uniprot ID   -
Organism   Variovorax sp. 160MFSha2.1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670395..682008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL838_RS02945 (ABL838_02945) argS 670413..672098 (+) 1686 WP_184640025.1 arginine--tRNA ligase -
  ABL838_RS02950 (ABL838_02950) - 672110..672889 (+) 780 WP_418124068.1 SPOR domain-containing protein -
  ABL838_RS02955 (ABL838_02955) - 673065..673712 (+) 648 WP_369659843.1 thiol:disulfide interchange protein DsbA/DsbL -
  ABL838_RS02960 (ABL838_02960) lptA 673866..674582 (+) 717 WP_418124070.1 lipopolysaccharide transport periplasmic protein LptA -
  ABL838_RS02965 (ABL838_02965) lptB 674579..675373 (+) 795 WP_418124071.1 LPS export ABC transporter ATP-binding protein -
  ABL838_RS02970 (ABL838_02970) rpoN/rpoN1 675395..677008 (+) 1614 WP_418124073.1 RNA polymerase factor sigma-54 Machinery gene
  ABL838_RS02975 (ABL838_02975) - 677019..678620 (+) 1602 WP_418124074.1 phospholipase D family protein -
  ABL838_RS02980 (ABL838_02980) - 678622..679265 (-) 644 Protein_589 LysE family translocator -
  ABL838_RS02985 (ABL838_02985) - 679285..679935 (-) 651 WP_418124075.1 YceI family protein -
  ABL838_RS02990 (ABL838_02990) - 679994..680590 (-) 597 WP_418124077.1 YceI family protein -
  ABL838_RS02995 (ABL838_02995) - 680605..681183 (-) 579 WP_418124078.1 cytochrome b -

Sequence

Protein


Download         Length: 537 a.a.        Molecular weight: 58855.81 Da        Isoelectric Point: 4.5582

>NTDB_id=1007795 ABL838_RS02970 WP_418124073.1 675395..677008(+) (rpoN/rpoN1) [Variovorax sp. 160MFSha2.1]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAVREEFGLETADAPVPRDEDGNGGSGS
EGGESDFAPTSGSTSTTSSSETASTAADSDGPAAEISEREPDWEGDGTVDMAPDDSEWGGDAPARQNNAGDDERADATEL
ARSQESLQSFLHRQALSLRLNESDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDEFDDLVHHFQVALGLLQSLEPA
GVGARDLGECLSIQLRAMASDDETEEEELVRKTAIAICKQPMELLARRDFKRLATLTRSSEELVRSALQVIARLEPKPGR
SFVDVERNIIVPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDT
ILRVSNAIVERQKSYFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTVELKYFFGSALGTETGGNASSTA
VRALIKQFVGSESVKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1614 bp        

>NTDB_id=1007795 ABL838_RS02970 WP_418124073.1 675395..677008(+) (rpoN/rpoN1) [Variovorax sp. 160MFSha2.1]
ATGAAGCAAGGGCTGTCCCTTCGCGTTTCGCAGCATCTGGCGCTCACGCCGCAGCTGCAGCAGTCGATCAGGCTGCTGCA
GCTCTCCACGCTCGAACTGAGCCAGGAGGTGGAGCAGATGCTCGACGAGAACCCGTTCCTCGAGCGCACCGCGGAAGAAG
CCGTGCGCGAAGAGTTCGGGCTCGAGACTGCGGATGCCCCGGTACCGCGCGACGAGGATGGCAATGGCGGCAGCGGCAGT
GAAGGCGGCGAAAGCGACTTCGCGCCCACGTCCGGTTCGACCTCCACCACTTCCTCTTCCGAAACGGCTTCCACGGCCGC
CGACTCCGACGGCCCCGCCGCCGAGATCTCCGAGCGCGAGCCCGACTGGGAAGGCGACGGCACCGTCGACATGGCGCCCG
ACGACAGCGAATGGGGCGGCGATGCGCCCGCGCGCCAGAACAACGCAGGCGACGACGAGCGCGCCGATGCCACCGAGCTC
GCGCGCAGCCAAGAGTCGCTGCAGTCCTTTTTGCACCGCCAGGCGCTGAGCCTGCGGCTCAACGAGAGCGACAGCGCCGC
GCTGCGCTTTCTCATCGAATCGCTCAACGACGACGGCTACCTCGAAGACTCGCTGCCCGCGCTGGCCTCGGGCCTGGCCG
GCGACGACAACGACGAGTTCGACGACCTCGTGCACCACTTCCAGGTGGCGCTCGGCCTGCTGCAGAGCCTGGAGCCCGCC
GGCGTCGGCGCGCGCGACCTCGGCGAGTGCCTGAGCATCCAGCTGCGCGCCATGGCCAGCGACGACGAGACCGAGGAAGA
AGAGCTGGTCCGCAAGACCGCCATCGCCATCTGCAAGCAGCCCATGGAGCTGCTCGCGCGCCGCGACTTCAAGCGCCTGG
CCACGCTCACCCGCAGCAGCGAGGAGCTGGTGCGCTCGGCGCTGCAGGTCATCGCGCGGCTGGAGCCCAAGCCGGGCCGC
AGCTTCGTCGACGTGGAACGCAACATCATCGTTCCCGACGTCATCGTCACCAAGACCGGGCGCGGCACCAACGTGAAGTT
CCGCGTCATGCTCAATCCCGAGGTCATGCCGCGCCTGCGCGTGCACGACATCTACGCCGGCGCGCTCAAGTCGCACAAGG
GCGAGGGCAGCCAGGCGCTGTCGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACC
ATCCTGCGCGTGAGCAACGCCATCGTCGAGCGGCAGAAGAGCTACTTCGTGCACGGCGAGCTCGCCATGCGCCCGCTGGT
GCTGCGCGAGATCGCCGACGAGCTGGGCCTGCACGAGTCCACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGC
CCTTCGGCACGGTCGAGCTCAAGTACTTCTTCGGCTCGGCGCTGGGCACCGAGACCGGCGGCAACGCGTCGAGCACCGCG
GTGCGCGCGCTCATCAAGCAGTTCGTCGGCTCGGAGAGCGTGAAGAAGCCGCTGTCGGACAGCCAGATCTCCGAGATGCT
GAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTCGCCAAGTACCGCGAAGCATTGCGCATCGCCCCCGCCAACCTGC
GCAAGGCACTCTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(158-365)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(379-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.02

100

0.512

Multiple sequence alignment