Detailed information NTG1007765

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABL843_RS25875
• Genome accession: NZ_CP157620
• Coordinates: 5668187..5669419 (+)
• Length: 410 a.a.
• NCBI ID: WP_418117816.1
• Uniprot ID: -
• Organism: Variovorax sp. 350MFTsu5.1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5663187..5674419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL843_RS25855 (ABL843_25850)	-	5663678..5664316 (-)	639	WP_184640691.1	LysE/ArgO family amino acid transporter	-
ABL843_RS25860 (ABL843_25855)	-	5664405..5665322 (+)	918	WP_418117814.1	LysR family transcriptional regulator ArgP	-
ABL843_RS25865 (ABL843_25860)	-	5665323..5666699 (-)	1377	WP_418117815.1	M16 family metallopeptidase	-
ABL843_RS25870 (ABL843_25865)	-	5666715..5668109 (-)	1395	WP_418120519.1	M16 family metallopeptidase	-
ABL843_RS25875 (ABL843_25870)	pilA	5668187..5669419 (+)	1233	WP_418117816.1	signal recognition particle-docking protein FtsY	Machinery gene
ABL843_RS25880 (ABL843_25875)	-	5669644..5671452 (-)	1809	WP_418117817.1	hybrid sensor histidine kinase/response regulator	-
ABL843_RS25885 (ABL843_25880)	-	5671449..5672180 (-)	732	WP_126025548.1	response regulator transcription factor	-
ABL843_RS25890 (ABL843_25885)	-	5672366..5672830 (+)	465	WP_126025549.1	DUF962 domain-containing protein	-
ABL843_RS25895 (ABL843_25890)	rpoH	5672929..5673870 (+)	942	WP_126025550.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 42544.91 Da
• Isoelectric Point: 5.3298

>NTDB_id=1007765 ABL843_RS25875 WP_418117816.1 5668187..5669419(+) (pilA) [Variovorax sp. 350MFTsu5.1]
MFSFFKKKPPAEAPDAPAPTPPAPAAPAPDPAPARSVFSPSSWFGSKPAAEETPAPAPVAAPASVPVPSPAPAPAAAPVV
PPSPAAAPSATPAPAPTPVTAAPVAEPVIATERKGWFDKLKTGLRKTGTGIQAVFVNAKIDEELYEELESALLMADTGVK
ATEYLLDDLRGRVKRQMATDASQVKALLAETVADLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLADEGAS
VLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVNAGRARGKDVVLVDTAGRLPTQLHLMDELKKIKRVV
TKADGTAPHEVLLVIDGNTGQNALAQVKAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFN
AREFAQALLG

Nucleotide

• Length: 1233 bp

>NTDB_id=1007765 ABL843_RS25875 WP_418117816.1 5668187..5669419(+) (pilA) [Variovorax sp. 350MFTsu5.1]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAGGCCCCCGACGCGCCGGCGCCCACCCCGCCGGCCCCGGCGGCGCC
TGCCCCGGACCCCGCGCCCGCACGCTCGGTGTTTTCGCCTTCGAGCTGGTTCGGCTCGAAGCCGGCGGCGGAAGAAACGC
CGGCGCCCGCACCGGTCGCCGCGCCAGCGTCCGTACCGGTTCCCTCCCCCGCTCCCGCACCGGCCGCTGCCCCGGTCGTG
CCACCCTCCCCGGCCGCCGCTCCTTCCGCCACGCCTGCGCCCGCGCCGACTCCGGTGACCGCCGCGCCGGTTGCCGAACC
CGTGATCGCCACCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCCAGGCCG
TGTTCGTCAATGCGAAGATCGACGAAGAGCTCTACGAGGAGCTCGAATCCGCCCTGCTGATGGCCGACACCGGCGTCAAG
GCGACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTGAAGCGCCAGATGGCCACCGATGCTTCGCAGGTCAAGGCACT
GCTGGCCGAGACAGTGGCCGACCTGCTGAAGCCGCTCGAGAAGCCACTGGTGATCGGCCAGTTCACGCCCACCGTGATCA
TGGTGGCCGGCGTCAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCCGACGAAGGCGCCTCG
GTGCTGCTGGCCGCCGCCGACACCTTCCGGGCGGCTGCGCGCGAGCAGCTGCTGGTCTGGGCCGACCGCAATACCGTCGA
GATCGTGAGCCAGGAAGGCGGCGACCCGTCGGCCGTGAGCTTCGACGCGGTGAACGCCGGCCGGGCCCGCGGCAAGGACG
TGGTGCTGGTCGACACGGCCGGGCGCCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTC
ACCAAGGCCGACGGCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCGCTGGCGCAGGT
CAAGGCTTTCGACGAGACGCTGGGCCTCACGGGCCTGGTCGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGT
GCGCCATCGCGCGGGAAAGGCCGATCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTGGAAACCTTCAAC
GCCCGCGAGTTCGCGCAGGCGCTGCTCGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (128-190)

• SRP54-type protein, GTPase domain (SRP54) (210-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	100	0.517