Detailed information NTG1007580

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: APEC5202_RS21900
• Genome accession: NZ_LR740758
• Coordinates: 4497398..4498423 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain BEN5202 isolate laying hen 51 weeks old
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4492398..4503423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APEC5202_RS21875 (APEC5202_4332)	rraA	4492812..4493297 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
APEC5202_RS21880 (APEC5202_4333)	menA	4493390..4494316 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
APEC5202_RS21885 (APEC5202_4334)	hslU	4494383..4495714 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
APEC5202_RS21890 (APEC5202_4335)	hslV	4495724..4496254 (-)	531	WP_000208235.1	ATP-dependent protease subunit HslV	-
APEC5202_RS21895 (APEC5202_4336)	ftsN	4496347..4497306 (-)	960	WP_000068834.1	cell division protein FtsN	-
APEC5202_RS21900 (APEC5202_4337)	cytR	4497398..4498423 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
APEC5202_RS21905 (APEC5202_4338)	priA	4498579..4500777 (-)	2199	WP_001350873.1	primosomal protein N'	Machinery gene
APEC5202_RS21910 (APEC5202_4339)	rpmE	4500980..4501192 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
APEC5202_RS21915 (APEC5202_4340)	yiiX	4501253..4501861 (-)	609	WP_103530006.1	YiiX family permuted papain-like enzyme	-
APEC5202_RS21920 (APEC5202_4341)	metJ	4501921..4502238 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=1007580 APEC5202_RS21900 WP_000644904.1 4497398..4498423(-) (cytR) [Escherichia coli strain BEN5202 isolate laying hen 51 weeks old]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1007580 APEC5202_RS21900 WP_000644904.1 4497398..4498423(-) (cytR) [Escherichia coli strain BEN5202 isolate laying hen 51 weeks old]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCTGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628