Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABKJ27_RS04015 Genome accession   NZ_CP157578
Coordinates   872674..873483 (+) Length   269 a.a.
NCBI ID   WP_410012093.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 867674..878483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS03995 (ABKJ27_04010) pta 868181..869155 (+) 975 WP_153199058.1 phosphate acetyltransferase -
  ABKJ27_RS04000 (ABKJ27_04015) mutY 869392..870567 (+) 1176 WP_261031207.1 A/G-specific adenine glycosylase -
  ABKJ27_RS04005 (ABKJ27_04020) micA 870623..871330 (+) 708 WP_020901406.1 response regulator YycF Regulator
  ABKJ27_RS04010 (ABKJ27_04025) micB 871323..872672 (+) 1350 WP_410012092.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ABKJ27_RS04015 (ABKJ27_04030) vicX 872674..873483 (+) 810 WP_410012093.1 MBL fold metallo-hydrolase Regulator
  ABKJ27_RS04020 (ABKJ27_04035) - 873516..873863 (-) 348 WP_410012094.1 thioredoxin -
  ABKJ27_RS04025 (ABKJ27_04040) - 873975..875693 (-) 1719 WP_004254235.1 phospho-sugar mutase -
  ABKJ27_RS04030 (ABKJ27_04045) - 875847..877748 (+) 1902 WP_410012095.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29928.96 Da        Isoelectric Point: 6.1729

>NTDB_id=1007457 ABKJ27_RS04015 WP_410012093.1 872674..873483(+) (vicX) [Streptococcus sp. KHUD_011]
MSEIGFKYSILASGSSGNSFYLETPKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDCSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1007457 ABKJ27_RS04015 WP_410012093.1 872674..873483(+) (vicX) [Streptococcus sp. KHUD_011]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGTAAGAAAATCACCAGCTTACTTGCTGAAATTAATCGTAAGCCAGAAGATT
TGGATGCCATCTTGATTACACATGAGCATTCAGACCATATCCACGGAGTGGGAGTTTTGGCTCGCAAGTATGGTATGGAT
TTGTATGCCAATGAAAAGACCTGGCAAGCAATGGAAAATAGCAAGTACCTTGGAAAGGTGGATTGTTCGCAAAAGCATAT
CTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTTAGCCACGATGCGGTTGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTTAGTGACCGTATGGCAGGA
ATTGTCGAGAATGCAGATGGTTATCTTATCGAGTCCAACCATGATGTAGAGATTTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCGGATCTCGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACCCTAGGAA
ATCGCACTAAGAAAATCTATCTTGGTCACTTGTCTAAGGAAAACAATATCAAGGAGCTGGCTCACATGACCATGGTCAAC
CAGCTAGCCCAAGCTGATTTAGGTGTAGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.695

100

0.777

Multiple sequence alignment