Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ABKJ27_RS02470 Genome accession   NZ_CP157578
Coordinates   522893..524125 (+) Length   410 a.a.
NCBI ID   WP_025169664.1    Uniprot ID   A0A2I1UFS7
Organism   Streptococcus sp. KHUD_011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 517893..529125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS02445 (ABKJ27_02455) tpiA 518595..519353 (+) 759 WP_000087893.1 triose-phosphate isomerase -
  ABKJ27_RS02450 (ABKJ27_02460) lytC 519387..520997 (+) 1611 WP_410011964.1 choline binding-anchored murein hydrolase LytC -
  ABKJ27_RS02455 (ABKJ27_02465) - 521531..522049 (+) 519 WP_033682099.1 Dps family protein -
  ABKJ27_RS02460 (ABKJ27_02470) - 522180..522686 (+) 507 WP_049516327.1 dihydrofolate reductase -
  ABKJ27_RS02465 (ABKJ27_02475) - 522686..522856 (+) 171 WP_000442260.1 hypothetical protein -
  ABKJ27_RS02470 (ABKJ27_02480) clpX 522893..524125 (+) 1233 WP_025169664.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ABKJ27_RS02475 (ABKJ27_02485) yihA 524134..524721 (+) 588 WP_020903048.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ABKJ27_RS02480 (ABKJ27_02490) - 524732..525112 (+) 381 WP_001140420.1 RidA family protein -
  ABKJ27_RS02485 (ABKJ27_02495) rapZ 525164..526054 (+) 891 WP_020903049.1 RNase adapter RapZ -
  ABKJ27_RS02490 (ABKJ27_02500) - 526051..527028 (+) 978 WP_410011965.1 YvcK family protein -
  ABKJ27_RS02495 (ABKJ27_02505) whiA 527025..527936 (+) 912 WP_410011966.1 DNA-binding protein WhiA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45668.16 Da        Isoelectric Point: 4.4240

>NTDB_id=1007448 ABKJ27_RS02470 WP_025169664.1 522893..524125(+) (clpX) [Streptococcus sp. KHUD_011]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1007448 ABKJ27_RS02470 WP_025169664.1 522893..524125(+) (clpX) [Streptococcus sp. KHUD_011]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTAGCCCAGGAAATCATTCGTGAGGAGTTGGCGGAAGAAG
TCTTGGCAGACTTGTCTGAGGTACCAAAACCAATCGAACTTCTCCATATCTTGAATCACTATGTAATCGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTACAATCACTACAAACGTATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCTGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTACCTTTTGCGATTGCGGATGCGACAGCTCTTACTGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTTCTCAAACTCTTGCAGGCTGCTGATTTTAACATTGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
TAAGATTGCAAAGAAGAGCGAGAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCTAGCGTACCGCCTCAAGGTGGACGCAAGCATCCACAACAAGAGATGATTCAAGTGGATACT
AAAAACATCCTCTTCATCGTGGGTGGTGCCTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAAGCGATTGATGAAAATAGCTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGTTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTTGATGACTTGGTTCGT
ATCTTGAAAGAGCCAAGAAATGCCTTGGTTAAACAATATCAAACCTTGCTTTCTTATGATGATGTCGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAAATCGCCAATAAGGCCATCGAACGGAAGACAGGTGCGCGTGGTCTTCGCTCAATTATTGAAG
AAACCATGCTAGACGTCATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACAAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCTTGGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1UFS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment