Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABKJ27_RS01295 Genome accession   NZ_CP157578
Coordinates   257230..258999 (+) Length   589 a.a.
NCBI ID   WP_410011875.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 252230..263999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01270 (ABKJ27_01275) recA 252303..253469 (+) 1167 WP_238095613.1 recombinase RecA Machinery gene
  ABKJ27_RS01275 (ABKJ27_01280) - 253691..255061 (+) 1371 WP_410011874.1 MATE family efflux transporter -
  ABKJ27_RS01280 (ABKJ27_01285) - 255158..255874 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABKJ27_RS01285 (ABKJ27_01290) - 255924..256571 (-) 648 WP_386684791.1 DUF4190 domain-containing protein -
  ABKJ27_RS01290 (ABKJ27_01295) - 256785..257255 (+) 471 WP_084925611.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABKJ27_RS01295 (ABKJ27_01300) rcrP 257230..258999 (+) 1770 WP_410011875.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS01300 (ABKJ27_01305) rcrQ 258989..260749 (+) 1761 WP_410011876.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS01305 (ABKJ27_01310) - 260845..261348 (+) 504 WP_410011877.1 phosphatase PAP2 family protein -
  ABKJ27_RS01310 (ABKJ27_01315) - 261462..261908 (+) 447 WP_000776607.1 LytTR family DNA-binding domain-containing protein -
  ABKJ27_RS01315 (ABKJ27_01320) - 261913..262587 (+) 675 WP_410011878.1 LiaF transmembrane domain-containing protein -
  ABKJ27_RS01320 (ABKJ27_01325) rpmB 262693..262881 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  ABKJ27_RS01325 (ABKJ27_01330) - 263036..263401 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65323.70 Da        Isoelectric Point: 5.2794

>NTDB_id=1007438 ABKJ27_RS01295 WP_410011875.1 257230..258999(+) (rcrP) [Streptococcus sp. KHUD_011]
MKKLAKRISGKEWGMILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMVGMSFLAFLSVVAVGFFAS
RVAASYTSRLRSDIFNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGPIMAIWAIGKILGHSEYWLWA
VLVAVIVNVLMTTVLMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEEYQNEKFAAANDELTRLNLFVNRLMAI
LNPIMMGISSGLSVAIYWIGAYVINDAAPIARLPLFSDMIVFMSYAMQVVMGFLLMGALFIVLPRTMVSAKRINQVLDLH
SSIQNPAQVQLADENLKGQVEFKDVTFRYAANSEAVIENVSFKAEAGQTVAFIGSTGSGKSTLVNLIPRFYDVSEGEILV
DGVNVQDYALEDLRNKVGYIPQKAVLFSGDVKGNLDFGQSQETPLSEQAMWQALELAQSKNFIEDKEAGLESEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTNSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLANNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=1007438 ABKJ27_RS01295 WP_410011875.1 257230..258999(+) (rcrP) [Streptococcus sp. KHUD_011]
ATGAAGAAATTAGCAAAACGAATTAGTGGAAAAGAATGGGGGATGATTTTACTAGCCATTCTCTTTACCTGTTTTTCGGT
CTATCTAGAGTTGGAAGTGCCAACCTATATCTCGAAAATTACGGATTTGCTAGGTAGTCAAGGTACTAATTTAGATGAGT
TGTGGCAGCCGGCAAGCATGATGGTGGGAATGTCCTTTCTTGCCTTCTTATCCGTAGTTGCAGTTGGATTTTTTGCATCC
CGAGTGGCGGCTTCTTATACTAGTAGGTTGAGAAGTGATATTTTTAACCGAGTTTTGGATTACTCGCAGACGGAGATTAA
GAAATTCTCTATTCCTAGCCTCTTGACGCGTACTACCAATGACATTACTCAAGTTCAAATGTTGATTACCATGGGCTTGC
AAGTGGTTACGCGTGGTCCGATTATGGCTATCTGGGCTATCGGGAAGATTTTAGGCCATTCAGAATACTGGCTCTGGGCC
GTACTTGTGGCAGTGATTGTCAACGTTTTGATGACAACTGTTTTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCA
GGGGCTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTTGACAGGTATCCGTGTTGTTCGTGCCTACAATGCTGAAG
AGTACCAAAATGAAAAATTTGCAGCAGCAAATGATGAATTGACACGCTTGAATTTGTTTGTCAACCGTCTTATGGCTATT
TTGAACCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTGGCGATTTACTGGATTGGGGCCTATGTGATTAATGACGC
TGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGTTTTCATGTCTTATGCTATGCAGGTTGTCATGGGCTTCC
TTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCAT
TCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGGCTGATGAAAACCTCAAAGGTCAGGTCGAATTTAAGGATGTGACCTT
CCGCTATGCGGCAAATTCGGAGGCGGTTATTGAGAATGTTAGCTTTAAAGCAGAAGCTGGTCAAACAGTGGCCTTTATTG
GGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGATGTGTCAGAAGGAGAAATTCTGGTG
GATGGTGTCAATGTTCAAGACTATGCTCTAGAAGATTTGCGCAACAAGGTTGGTTATATTCCCCAGAAAGCGGTTCTCTT
TTCAGGTGATGTCAAGGGCAATTTAGACTTTGGACAGAGTCAAGAAACACCACTTAGTGAGCAGGCTATGTGGCAAGCTC
TGGAATTGGCCCAGTCTAAGAACTTTATCGAAGACAAGGAAGCGGGCTTAGAGTCAGAAGTGGCCCAAGGAGGAACCAAC
TTCTCAGGTGGTCAAAGACAGCGTCTGGCCATTGCGCGTGCCTTGGCTCGGAAACCAGAAATCCTCATCTTTGATGACTC
CTTCTCAGCCTTAGATTACAAGACAGATCGAGTCCTACGCCAAGAGCTAGCAGAAAAAACTAATTCTATGACCAAACTCA
TCGTTGCACAGCGTATTTCAACGATTATGGATGCGGATTTGATTTTGGTCTTGGATCAAGGAAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTAATAACGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.223

100

0.676

Multiple sequence alignment