Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABKJ27_RS01300 Genome accession   NZ_CP157578
Coordinates   258989..260749 (+) Length   586 a.a.
NCBI ID   WP_410011876.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 253989..265749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01280 (ABKJ27_01285) - 255158..255874 (+) 717 WP_000532882.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABKJ27_RS01285 (ABKJ27_01290) - 255924..256571 (-) 648 WP_386684791.1 DUF4190 domain-containing protein -
  ABKJ27_RS01290 (ABKJ27_01295) - 256785..257255 (+) 471 WP_084925611.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABKJ27_RS01295 (ABKJ27_01300) rcrP 257230..258999 (+) 1770 WP_410011875.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS01300 (ABKJ27_01305) rcrQ 258989..260749 (+) 1761 WP_410011876.1 ABC transporter ATP-binding protein Regulator
  ABKJ27_RS01305 (ABKJ27_01310) - 260845..261348 (+) 504 WP_410011877.1 phosphatase PAP2 family protein -
  ABKJ27_RS01310 (ABKJ27_01315) - 261462..261908 (+) 447 WP_000776607.1 LytTR family DNA-binding domain-containing protein -
  ABKJ27_RS01315 (ABKJ27_01320) - 261913..262587 (+) 675 WP_410011878.1 LiaF transmembrane domain-containing protein -
  ABKJ27_RS01320 (ABKJ27_01325) rpmB 262693..262881 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  ABKJ27_RS01325 (ABKJ27_01330) - 263036..263401 (+) 366 WP_000216437.1 Asp23/Gls24 family envelope stress response protein -
  ABKJ27_RS01330 (ABKJ27_01335) - 263404..265071 (+) 1668 WP_070528646.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64793.49 Da        Isoelectric Point: 4.8525

>NTDB_id=1007439 ABKJ27_RS01300 WP_410011876.1 258989..260749(+) (rcrQ) [Streptococcus sp. KHUD_011]
MENKKMSLWKQSKPYLAGLQFALLIAFIATIVSNIITVYGPTRIKEMTNIIASGLETSVDVAAVAAIGGFLAVIYVIGLL
SNYLQAFLFTTAIQRFSERLRTAIADKINRLPLRYFDGHSQGDTLSRVTNDVDTAAQSLNQSLGTVLSSSLLVVAVLVTM
FGMNWILALVTVVSTLIGFAFVSVFMGKSQGFFKSQQQDLAAVNGYVEEMYSGHNVVTSYNAIESTKEEFAKLNNRLYDS
IWKSQFISGIMMPIMMFIGNFSYALVIIVGAALALNGQISIGIIVAFMAYVRIFSQPLSQIAQGITSLQQASAAMGRVFE
FLAEEEMADESHKERQLSDMKGQVVFDRVSFGYTPDRTIIHDFSATAHAGQKVAIVGPTGAGKTTIVNLLMKFYEIDKGS
IRIDDVDTKEMKRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQKDISDERVIEASKAVGIHHFIMTLPDGYDTVLDDTVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HDELMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1007439 ABKJ27_RS01300 WP_410011876.1 258989..260749(+) (rcrQ) [Streptococcus sp. KHUD_011]
ATGGAAAATAAGAAAATGTCTCTTTGGAAACAGAGTAAACCCTATCTTGCAGGCCTCCAGTTTGCCCTTCTGATAGCCTT
TATAGCAACAATCGTATCCAATATCATTACTGTATATGGTCCAACCCGCATCAAGGAAATGACCAACATCATTGCCAGTG
GTCTGGAAACCAGTGTGGATGTCGCTGCGGTTGCAGCTATTGGTGGTTTTTTGGCCGTGATTTATGTGATTGGACTCCTA
TCAAATTATTTGCAGGCCTTTCTGTTTACAACAGCCATTCAACGTTTTTCAGAGCGTTTGAGAACAGCCATTGCAGATAA
AATTAATCGCCTACCATTGAGATATTTTGATGGACACTCTCAAGGGGATACCTTGTCTCGTGTAACCAATGACGTTGACA
CTGCAGCCCAGTCCCTCAATCAAAGTCTAGGAACAGTTCTCTCATCTAGTTTACTGGTCGTGGCGGTCTTAGTAACCATG
TTTGGCATGAACTGGATTTTAGCCTTGGTGACGGTTGTGTCAACCCTTATTGGTTTTGCTTTCGTGTCTGTCTTTATGGG
CAAATCACAGGGATTTTTTAAGAGTCAGCAACAGGATTTGGCAGCTGTAAATGGTTATGTGGAAGAAATGTACTCTGGCC
ATAATGTGGTGACCAGTTACAATGCCATCGAGAGTACGAAAGAAGAGTTTGCGAAATTAAACAATCGTCTATATGACAGT
ATCTGGAAATCTCAATTTATTTCAGGAATTATGATGCCGATTATGATGTTTATTGGGAACTTTAGCTATGCCTTGGTGAT
TATTGTTGGTGCAGCCTTGGCTCTGAATGGACAGATTAGTATCGGGATTATCGTTGCCTTTATGGCCTACGTTCGTATCT
TTTCTCAGCCTCTTTCACAAATTGCCCAAGGGATTACTAGTCTTCAGCAGGCTAGTGCAGCCATGGGACGTGTCTTCGAA
TTCCTAGCTGAAGAGGAAATGGCAGACGAATCCCATAAAGAAAGACAGTTGAGCGATATGAAAGGGCAAGTGGTCTTTGA
TCGAGTTTCCTTTGGCTACACACCAGATCGAACCATTATCCATGACTTTTCTGCGACCGCTCATGCAGGTCAAAAGGTTG
CCATTGTCGGACCGACTGGAGCTGGGAAGACAACTATTGTCAATCTTTTGATGAAGTTTTATGAGATTGATAAGGGAAGC
ATCCGTATCGATGATGTCGATACCAAGGAGATGAAGCGTTCGGAAGTACACGATGCCTTTTCAATGGTCTTGCAGGACAC
CTGGCTCTTTGAAGGCACTATCCGAGACAATCTTATCTATAACCAAAAGGATATTAGTGATGAGCGCGTGATTGAAGCCA
GCAAGGCTGTAGGGATTCACCACTTTATTATGACCCTACCAGATGGTTACGATACTGTCTTGGACGATACAGTGACCTTG
TCTGTCGGACAAAAACAACTCTTGACCATCGCTCGTGCTTTGTTGAAAGATGCGCCACTCCTAATCCTAGATGAGGCGAC
CTCTTCGGTTGATACACGGACGGAGGAATTGATTCAGAAAGCCATGGACCGTTTGATGGAAGGTAGAACTTCCTTTGTCA
TCGCCCACCGCTTGTCAACTATCCGAAATGCTGATCTGATTCTTGTCATGAAAGATGGCAATATCATTGAGCAAGGCAAT
CATGATGAGTTGATGGCACAAGGAGGCTTCTACGCTGACCTTTATAACAGTCAATTTACAGAAGACGAAGCAGAAGAATA
A

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

67.123

99.659

0.669

Multiple sequence alignment