Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GPW69_RS09850 Genome accession   NZ_LR738724
Coordinates   2038666..2039115 (-) Length   149 a.a.
NCBI ID   WP_074391225.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033666..2044115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS09835 - 2034105..2034899 (+) 795 WP_024407655.1 formate/nitrite transporter family protein -
  GPW69_RS09840 - 2034982..2036766 (-) 1785 WP_074391223.1 ABC transporter ATP-binding protein -
  GPW69_RS09845 - 2036967..2038673 (-) 1707 WP_074391224.1 ABC transporter ATP-binding protein -
  GPW69_RS09850 rcrR 2038666..2039115 (-) 450 WP_074391225.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  GPW69_RS09855 - 2039337..2040353 (+) 1017 WP_074391226.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  GPW69_RS09860 galU 2040399..2041298 (+) 900 WP_024399879.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPW69_RS09865 - 2041317..2041994 (-) 678 WP_074391227.1 rhomboid family intramembrane serine protease -
  GPW69_RS09870 - 2041978..2042520 (-) 543 WP_074391228.1 5-formyltetrahydrofolate cyclo-ligase -
  GPW69_RS09875 - 2042562..2043689 (-) 1128 WP_074391229.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17645.15 Da        Isoelectric Point: 7.5576

>NTDB_id=1007192 GPW69_RS09850 WP_074391225.1 2038666..2039115(-) (rcrR) [Streptococcus suis isolate 9401240]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELRISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKENIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1007192 GPW69_RS09850 WP_074391225.1 2038666..2039115(-) (rcrR) [Streptococcus suis isolate 9401240]
ATGGGACATACTATTGCAGATTTTCGGAATTTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAGGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCCG
ATCAATTAAAAGAAAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416

Multiple sequence alignment