Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   ABLU28_RS03480 Genome accession   NZ_CP157495
Coordinates   680335..680847 (+) Length   170 a.a.
NCBI ID   WP_406834864.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-1     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 675335..685847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU28_RS03465 (ABLU28_03465) rpsB 676224..676991 (+) 768 WP_010906340.1 30S ribosomal protein S2 -
  ABLU28_RS03470 (ABLU28_03470) tsf 677113..678141 (+) 1029 WP_015427183.1 translation elongation factor Ts -
  ABLU28_RS03475 (ABLU28_03475) ezrA 678346..680076 (+) 1731 Protein_643 septation ring formation regulator EzrA -
  ABLU28_RS03480 (ABLU28_03480) comX 680335..680847 (+) 513 WP_406834864.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20713.81 Da        Isoelectric Point: 7.1302

>NTDB_id=1007176 ABLU28_RS03480 WP_406834864.1 680335..680847(+) (comX) [Lactococcus lactis strain 2B-1]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGIIILHLLLEEQNDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
ERRVKRNSLF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1007176 ABLU28_RS03480 WP_406834864.1 680335..680847(+) (comX) [Lactococcus lactis strain 2B-1]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTTTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATTATTATTTTACATCTTCTATTAGAAGAGCAGA
ACGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GAACGAAGAGTGAAGAGGAATTCCCTATTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

97.516

94.706

0.924
  comX Lactococcus lactis subsp. cremoris KW2

76.73

93.529

0.718

Multiple sequence alignment