Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLU28_RS03260 Genome accession   NZ_CP157495
Coordinates   630250..630750 (+) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 625250..635750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU28_RS03245 (ABLU28_03245) - 626893..628359 (-) 1467 WP_406834900.1 amino acid permease -
  ABLU28_RS03250 (ABLU28_03250) - 628881..629735 (+) 855 WP_058212871.1 undecaprenyl-diphosphate phosphatase -
  ABLU28_RS03255 (ABLU28_03255) rpsF 629927..630220 (+) 294 WP_003131954.1 30S ribosomal protein S6 -
  ABLU28_RS03260 (ABLU28_03260) ssb 630250..630750 (+) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  ABLU28_RS03265 (ABLU28_03265) rpsR 630924..631169 (+) 246 WP_003131952.1 30S ribosomal protein S18 -
  ABLU28_RS03270 (ABLU28_03270) - 631369..632142 (+) 774 WP_003131951.1 metallophosphoesterase -
  ABLU28_RS03275 (ABLU28_03275) - 632223..632531 (-) 309 WP_010906371.1 DUF960 domain-containing protein -
  ABLU28_RS03280 (ABLU28_03280) - 632569..633417 (-) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  ABLU28_RS03285 (ABLU28_03285) gnd 633782..634687 (+) 906 WP_038603774.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=1007174 ABLU28_RS03260 WP_003131953.1 630250..630750(+) (ssb) [Lactococcus lactis strain 2B-1]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1007174 ABLU28_RS03260 WP_003131953.1 630250..630750(+) (ssb) [Lactococcus lactis strain 2B-1]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373

Multiple sequence alignment