Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPW69_RS07365 Genome accession   NZ_LR738724
Coordinates   1490954..1491550 (-) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485954..1496550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS07340 - 1486148..1487509 (-) 1362 WP_044683167.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GPW69_RS07345 - 1487564..1488232 (-) 669 WP_044683166.1 ABC transporter ATP-binding protein -
  GPW69_RS07350 - 1488242..1489318 (-) 1077 WP_044683165.1 ABC transporter permease -
  GPW69_RS07355 - 1489319..1489699 (-) 381 WP_044683164.1 OsmC family protein -
  GPW69_RS07360 - 1489803..1490849 (-) 1047 WP_044673859.1 D-alanine--D-alanine ligase -
  GPW69_RS07365 recR 1490954..1491550 (-) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  GPW69_RS07370 pbp2b 1491559..1493634 (-) 2076 WP_024413929.1 penicillin-binding protein PBP2B -
  GPW69_RS07375 vga(F) 1493726..1495111 (-) 1386 WP_044681027.1 ABC-F type ribosomal protection protein Vga(F) -
  GPW69_RS07380 vicX 1495468..1496271 (-) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=1007170 GPW69_RS07365 WP_002935848.1 1490954..1491550(-) (recR) [Streptococcus suis isolate 9401240]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1007170 GPW69_RS07365 WP_002935848.1 1490954..1491550(-) (recR) [Streptococcus suis isolate 9401240]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGTTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCGAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCCCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTTCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATATCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49