Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   GPW69_RS05190 Genome accession   NZ_LR738724
Coordinates   1042488..1043558 (-) Length   356 a.a.
NCBI ID   WP_074391129.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037488..1048558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS05165 relB 1038701..1038940 (+) 240 WP_015646833.1 type II toxin-antitoxin system RelB family antitoxin -
  GPW69_RS05170 - 1038930..1039196 (+) 267 WP_074391125.1 type II toxin-antitoxin system RelE family toxin -
  GPW69_RS05175 braR 1039238..1039903 (+) 666 WP_074391126.1 DNA-binding response regulator Regulator
  GPW69_RS05180 - 1039900..1040841 (+) 942 WP_074391127.1 sensor histidine kinase -
  GPW69_RS05185 - 1040916..1042424 (+) 1509 WP_074391128.1 phosphomannomutase/phosphoglucomutase -
  GPW69_RS05190 xerS 1042488..1043558 (-) 1071 WP_074391129.1 tyrosine recombinase XerS Machinery gene
  GPW69_RS05195 - 1044244..1044675 (-) 432 WP_141668691.1 hypothetical protein -
  GPW69_RS05200 - 1045121..1045906 (-) 786 WP_074391130.1 trypsin-like peptidase domain-containing protein -
  GPW69_RS05205 - 1046444..1047184 (-) 741 WP_074391131.1 DUF3307 domain-containing protein -
  GPW69_RS05210 - 1047189..1047857 (-) 669 WP_074391132.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41519.68 Da        Isoelectric Point: 9.3408

>NTDB_id=1007154 GPW69_RS05190 WP_074391129.1 1042488..1043558(-) (xerS) [Streptococcus suis isolate 9401240]
MRRELLLEKIDQLKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQGKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1007154 GPW69_RS05190 WP_074391129.1 1042488..1043558(-) (xerS) [Streptococcus suis isolate 9401240]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAGCTGAAAGAAATCATGCCTTGGTATGTCTTGGAATATTATCAGTC
CAAGTTGTCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAGTGGTTACAGG
ATTCAGATTTAGTCGCTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACCAAGAAAGATATGGAG
GCCTTTATTCTATATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACTCTCTCGGCCCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAGAAGGTGTCCACCAAGAAGAAGAAGGAAACCTTGGCGGCTCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTTGATAAAGAATACCAGGGAAAGTTATCCAAACGTGCCCT
CTCATCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAGG
CGGTGAATTTGGACCTTCGAGATGTAAACCTCAATATGATGATCATCGAGGTGACGCGTAAGGGTGGTAAACGGGACTCG
GTCAATGTGGCTGGTTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCGGAAAAAAC
GGATACAGCCTTCTTCCTATCTGAATACCGTGGTCTGCCCAATCGTATCGACGCTTCTTCTATCGAAAAAATGGTTGCCA
AATATTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACGCTGGCAACACGGCTCTACGACGCCACC
AAGTCGCAAGTTCTGGTCAGTCATCAGCTAGGACACGCCAATACCCAGGTCACCGACCTCTACACTCATATCGTCAACGA
TGAGCAGAAAAATGCTCTTGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(190-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831