Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABLB99_RS17195 Genome accession   NZ_CP157447
Coordinates   3610114..3611535 (+) Length   473 a.a.
NCBI ID   WP_106466256.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605114..3616535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS17175 (ABLB99_17170) thrC 3605371..3606510 (+) 1140 WP_002048893.1 threonine synthase -
  ABLB99_RS17180 (ABLB99_17175) pbpG 3606618..3607664 (-) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLB99_RS17185 (ABLB99_17180) - 3607876..3608511 (+) 636 WP_000633799.1 response regulator -
  ABLB99_RS17190 (ABLB99_17185) pilS 3608522..3610090 (+) 1569 WP_004710946.1 PAS domain-containing sensor histidine kinase Regulator
  ABLB99_RS17195 (ABLB99_17190) pilR 3610114..3611535 (+) 1422 WP_106466256.1 sigma-54 dependent transcriptional regulator Regulator
  ABLB99_RS17200 (ABLB99_17195) - 3611539..3612723 (-) 1185 WP_004883636.1 S41 family peptidase -
  ABLB99_RS17205 (ABLB99_17200) gpmI 3612739..3614286 (-) 1548 WP_022575138.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLB99_RS17210 (ABLB99_17205) lptG 3614412..3615482 (-) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53183.43 Da        Isoelectric Point: 6.6690

>NTDB_id=1006949 ABLB99_RS17195 WP_106466256.1 3610114..3611535(+) (pilR) [Acinetobacter nosocomialis strain XH1727]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIVTVSQS
LQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1006949 ABLB99_RS17195 WP_106466256.1 3610114..3611535(+) (pilR) [Acinetobacter nosocomialis strain XH1727]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACAAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCGCGCTCA
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAGGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGTATGCAGGTTAAATTACTACGTGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGCGCGAGTCATCAAGACTTAGATTTATTGGTTAGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACTGAGGCTGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCGCATTTGCACCCAGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGTAACGGTATCTCAAAGC
TTGCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAACGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.715

100

0.947
  pilR Pseudomonas aeruginosa PAK

50.433

97.674

0.493

Multiple sequence alignment