Detailed information NTG1006945

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABLB99_RS16745
• Genome accession: NZ_CP157447
• Coordinates: 3517744..3518604 (+)
• Length: 286 a.a.
• NCBI ID: WP_022575844.1
• Uniprot ID: A0A2T7FRH3
• Organism: Acinetobacter nosocomialis strain XH1727
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3512744..3523604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLB99_RS16725 (ABLB99_16720)	secG	3513351..3513680 (-)	330	WP_002156913.1	preprotein translocase subunit SecG	-
ABLB99_RS16730 (ABLB99_16725)	tpiA	3513693..3514487 (-)	795	WP_139888185.1	triose-phosphate isomerase	-
ABLB99_RS16735 (ABLB99_16730)	pilB	3514778..3516490 (+)	1713	WP_106465258.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABLB99_RS16740 (ABLB99_16735)	pilC	3516518..3517744 (+)	1227	WP_004710832.1	type II secretion system F family protein	Machinery gene
ABLB99_RS16745 (ABLB99_16740)	pilD	3517744..3518604 (+)	861	WP_022575844.1	A24 family peptidase	Machinery gene
ABLB99_RS16750 (ABLB99_16745)	coaE	3518606..3519202 (+)	597	WP_106465257.1	dephospho-CoA kinase	-
ABLB99_RS16755 (ABLB99_16750)	-	3519199..3520113 (-)	915	WP_106465256.1	DMT family transporter	-
ABLB99_RS16760 (ABLB99_16755)	rlmB	3520149..3520898 (-)	750	WP_002156969.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABLB99_RS16765 (ABLB99_16760)	-	3521000..3521326 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ABLB99_RS16770 (ABLB99_16765)	-	3521403..3522713 (-)	1311	WP_106465255.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32107.52 Da
• Isoelectric Point: 7.1784

>NTDB_id=1006945 ABLB99_RS16745 WP_022575844.1 3517744..3518604(+) (pilD) [Acinetobacter nosocomialis strain XH1727]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACHQP
IRWYQNIPLISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1006945 ABLB99_RS16745 WP_022575844.1 3517744..3518604(+) (pilD) [Acinetobacter nosocomialis strain XH1727]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACACCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCATGCCCTGCATGCCATCAACCC
ATCCGTTGGTATCAAAATATCCCACTCATAAGCTGGCTAGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
CATTCGCTATCCAGCCATCGAACTACTTACCATGCTATGTTCATTGGTGGTGGTTATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTGGTCCTCACATGGGTACTGATAGCACTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTTGGTTTAGGCATTAACACCTTTAATATCTACACCTCACCCAACTCGGCCATTTGGGG
TTACCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTAATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCGTTTGGGCCATATATTGCCAT
TGCAGGTTGGGTTGCCTTTTTATGGGGCGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

3D structure

• AlphaFold DB: A0A2T7FRH3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	100	100	1
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441