Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABLB99_RS01995 Genome accession   NZ_CP157447
Coordinates   424319..424954 (-) Length   211 a.a.
NCBI ID   WP_106465158.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419319..429954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS01960 (ABLB99_01960) mlaE 419647..420423 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ABLB99_RS01965 (ABLB99_01965) - 420423..421106 (+) 684 WP_106465160.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABLB99_RS01970 (ABLB99_01970) - 421133..421774 (+) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  ABLB99_RS01975 (ABLB99_01975) - 421786..422073 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ABLB99_RS01980 (ABLB99_01980) - 422148..423161 (-) 1014 WP_002049699.1 CorA family divalent cation transporter -
  ABLB99_RS01985 (ABLB99_01985) - 423319..423900 (+) 582 WP_106465159.1 TIGR00730 family Rossman fold protein -
  ABLB99_RS01990 (ABLB99_01990) - 423915..424316 (+) 402 WP_006582595.1 NUDIX domain-containing protein -
  ABLB99_RS01995 (ABLB99_01995) comF 424319..424954 (-) 636 WP_106465158.1 ComF family protein Machinery gene
  ABLB99_RS02000 (ABLB99_02000) recG 424947..426992 (-) 2046 WP_106465157.1 ATP-dependent DNA helicase RecG -
  ABLB99_RS02005 (ABLB99_02005) - 427013..427828 (+) 816 WP_006580703.1 NAD(P)H-binding protein -
  ABLB99_RS02010 (ABLB99_02010) adeT2 427908..428894 (+) 987 WP_106465245.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24655.88 Da        Isoelectric Point: 9.9089

>NTDB_id=1006922 ABLB99_RS01995 WP_106465158.1 424319..424954(-) (comF) [Acinetobacter nosocomialis strain XH1727]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1006922 ABLB99_RS01995 WP_106465158.1 424319..424954(-) (comF) [Acinetobacter nosocomialis strain XH1727]
ATGTTTAAGTTGTTCAATCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAGGTCTTACAGCAAATAAAATTTCCTAAGGTTCAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAA
TCAGGCGCTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

95.735

100

0.957
  comF Acinetobacter baumannii D1279779

94.787

100

0.948

Multiple sequence alignment