Detailed information NTG1006898

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABLC01_RS16790
• Genome accession: NZ_CP157442
• Coordinates: 3542032..3542892 (+)
• Length: 286 a.a.
• NCBI ID: WP_032070754.1
• Uniprot ID: A0AAE9M8Y4
• Organism: Acinetobacter pittii strain XH1728
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3537032..3547892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLC01_RS16770 (ABLC01_16765)	secG	3537639..3537968 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
ABLC01_RS16775 (ABLC01_16770)	tpiA	3537981..3538775 (-)	795	WP_032063691.1	triose-phosphate isomerase	-
ABLC01_RS16780 (ABLC01_16775)	pilB	3539067..3540779 (+)	1713	WP_032070753.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABLC01_RS16785 (ABLC01_16780)	pilC	3540806..3542032 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
ABLC01_RS16790 (ABLC01_16785)	pilD	3542032..3542892 (+)	861	WP_032070754.1	A24 family peptidase	Machinery gene
ABLC01_RS16795 (ABLC01_16790)	coaE	3542894..3543490 (+)	597	WP_032070755.1	dephospho-CoA kinase	-
ABLC01_RS16800 (ABLC01_16795)	-	3543487..3544401 (-)	915	WP_032070756.1	DMT family transporter	-
ABLC01_RS16805 (ABLC01_16800)	rlmB	3544437..3545186 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABLC01_RS16810 (ABLC01_16805)	-	3545289..3545615 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
ABLC01_RS16815 (ABLC01_16810)	-	3545692..3547002 (-)	1311	WP_032063688.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32128.61 Da
• Isoelectric Point: 6.4261

>NTDB_id=1006898 ABLC01_RS16790 WP_032070754.1 3542032..3542892(+) (pilD) [Acinetobacter pittii strain XH1728]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1006898 ABLC01_RS16790 WP_032070754.1 3542032..3542892(+) (pilD) [Acinetobacter pittii strain XH1728]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATATTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGTTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437