Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ABLB98_RS07695 Genome accession   NZ_CP157435
Coordinates   1603025..1603411 (-) Length   128 a.a.
NCBI ID   WP_087545361.1    Uniprot ID   -
Organism   Acinetobacter sp. XH1639     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1598025..1608411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS07665 (ABLB98_07660) tadA 1598326..1598850 (-) 525 WP_256415044.1 tRNA adenosine(34) deaminase TadA -
  ABLB98_RS07670 (ABLB98_07665) - 1598856..1599980 (-) 1125 WP_348882563.1 enoyl-CoA hydratase/isomerase family protein -
  ABLB98_RS07675 (ABLB98_07670) ung 1599977..1600690 (-) 714 WP_348882562.1 uracil-DNA glycosylase -
  ABLB98_RS07680 (ABLB98_07675) - 1600736..1601332 (-) 597 WP_348882511.1 6-carboxytetrahydropterin synthase -
  ABLB98_RS07685 (ABLB98_07680) gspK 1601443..1602399 (-) 957 WP_348882510.1 type II secretion system minor pseudopilin GspK -
  ABLB98_RS07690 (ABLB98_07685) xcpW 1602396..1603025 (-) 630 WP_348882561.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ABLB98_RS07695 (ABLB98_07690) xcpV 1603025..1603411 (-) 387 WP_087545361.1 type II secretion system minor pseudopilin GspI Machinery gene
  ABLB98_RS07700 (ABLB98_07695) - 1603398..1603949 (-) 552 WP_005159908.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABLB98_RS07705 (ABLB98_07700) - 1603958..1604569 (-) 612 WP_034601445.1 TetR/AcrR family transcriptional regulator -
  ABLB98_RS07710 (ABLB98_07705) - 1604610..1605383 (-) 774 WP_348882509.1 TatD family hydrolase -
  ABLB98_RS07715 (ABLB98_07710) - 1605400..1605744 (-) 345 WP_004662384.1 PilZ domain-containing protein -
  ABLB98_RS07720 (ABLB98_07715) - 1606083..1607066 (-) 984 WP_348882508.1 DNA polymerase III subunit delta' -
  ABLB98_RS07725 (ABLB98_07720) kdsB 1607069..1607830 (-) 762 WP_348882507.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14267.73 Da        Isoelectric Point: 10.0997

>NTDB_id=1006842 ABLB98_RS07695 WP_087545361.1 1603025..1603411(-) (xcpV) [Acinetobacter sp. XH1639]
MKKIKAFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSSAILRTKAQFVAMNEIAMMEMNQEWLDGTQSKQVTSQGETWQ
IDKKAQATISPKIQRIELQVSLFNTEQGKVEAGITNMVFFNYPAKAKT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=1006842 ABLB98_RS07695 WP_087545361.1 1603025..1603411(-) (xcpV) [Acinetobacter sp. XH1639]
ATGAAGAAGATTAAAGCATTTACCCTGTTGGAAGTAATGGTTGCTTTAGCGATATTTGCTGTCGCTGCAATTGCATTAAC
AAAAATTGCCATGCAATATACACAATCTACATCGAGTGCGATTTTGCGAACAAAAGCACAGTTCGTTGCAATGAATGAGA
TTGCAATGATGGAAATGAATCAAGAATGGTTAGATGGAACGCAATCGAAACAGGTGACTTCTCAAGGTGAGACTTGGCAG
ATTGATAAAAAAGCACAGGCTACAATTAGCCCCAAAATACAACGTATCGAATTACAAGTAAGTTTATTTAATACTGAGCA
AGGTAAAGTTGAAGCGGGCATCACCAATATGGTGTTTTTTAATTATCCAGCAAAAGCTAAAACATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(43-102)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

81.6

97.656

0.797

Multiple sequence alignment