Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABLB98_RS02635 Genome accession   NZ_CP157435
Coordinates   551887..552774 (+) Length   295 a.a.
NCBI ID   WP_348883455.1    Uniprot ID   A0AB39KJP2
Organism   Acinetobacter sp. XH1639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 509180..554855 551887..552774 within 0


Gene organization within MGE regions


Location: 509180..554855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS02420 (ABLB98_02415) purU 509180..510043 (+) 864 WP_005218264.1 formyltetrahydrofolate deformylase -
  ABLB98_RS02425 (ABLB98_02420) - 510289..511053 (+) 765 WP_005162440.1 energy transducer TonB -
  ABLB98_RS02430 (ABLB98_02425) - 511096..511716 (+) 621 WP_004958871.1 MotA/TolQ/ExbB proton channel family protein -
  ABLB98_RS02435 (ABLB98_02430) - 511718..512122 (+) 405 WP_348882705.1 biopolymer transporter ExbD -
  ABLB98_RS02440 (ABLB98_02435) msrA 512172..512696 (-) 525 WP_348882706.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ABLB98_RS02445 (ABLB98_02440) - 513036..514091 (-) 1056 WP_348882707.1 DUF4105 domain-containing protein -
  ABLB98_RS02450 (ABLB98_02445) - 514112..514621 (-) 510 WP_348882708.1 dihydrofolate reductase -
  ABLB98_RS02455 (ABLB98_02450) thyA 514643..514927 (-) 285 Protein_468 thymidylate synthase -
  ABLB98_RS02460 (ABLB98_02455) - 515260..516192 (+) 933 Protein_469 IS5 family transposase -
  ABLB98_RS02465 (ABLB98_02460) - 516318..516545 (-) 228 WP_025467336.1 helix-turn-helix domain-containing protein -
  ABLB98_RS02470 (ABLB98_02465) - 516623..517111 (+) 489 WP_004668582.1 hypothetical protein -
  ABLB98_RS02475 (ABLB98_02470) - 517225..517385 (+) 161 Protein_472 IS5/IS1182 family transposase -
  ABLB98_RS02480 (ABLB98_02475) - 517962..518294 (-) 333 WP_369028921.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  ABLB98_RS02485 (ABLB98_02480) - 518311..518469 (-) 159 WP_178883070.1 hypothetical protein -
  ABLB98_RS02490 (ABLB98_02485) - 518790..519206 (+) 417 Protein_475 type I restriction-modification system subunit M N-terminal domain-containing protein -
  ABLB98_RS02495 (ABLB98_02490) - 519275..520440 (+) 1166 WP_085940850.1 IS3-like element ISAba21 family transposase -
  ABLB98_RS02500 (ABLB98_02495) - 520495..522450 (+) 1956 WP_000693745.1 alkyl/aryl-sulfatase -
  ABLB98_RS02505 (ABLB98_02500) - 522748..523494 (+) 747 WP_004645384.1 IS5-like element ISAba31 family transposase -
  ABLB98_RS02510 (ABLB98_02505) - 523514..523759 (+) 246 WP_052690212.1 hypothetical protein -
  ABLB98_RS02515 (ABLB98_02510) - 523861..524880 (-) 1020 WP_045796736.1 AraC family transcriptional regulator -
  ABLB98_RS02520 (ABLB98_02515) - 525034..526479 (+) 1446 WP_061403633.1 coniferyl aldehyde dehydrogenase -
  ABLB98_RS02525 (ABLB98_02520) - 526594..528312 (+) 1719 WP_061403634.1 GMC oxidoreductase -
  ABLB98_RS02530 (ABLB98_02525) - 528631..529377 (-) 747 WP_087662167.1 IS5-like element ISAba31 family transposase -
  ABLB98_RS02535 (ABLB98_02530) - 529596..530563 (-) 968 Protein_484 IS30 family transposase -
  ABLB98_RS02540 (ABLB98_02535) - 530641..532110 (+) 1470 WP_151711499.1 TnsD family Tn7-like transposition protein -
  ABLB98_RS02545 (ABLB98_02540) - 532094..533689 (+) 1596 WP_178883239.1 Tn7-like element transposition protein TnsE -
  ABLB98_RS02550 (ABLB98_02545) - 533786..534259 (+) 474 WP_005088774.1 hypothetical protein -
  ABLB98_RS02555 (ABLB98_02550) - 534262..535506 (+) 1245 WP_005088776.1 ImmA/IrrE family metallo-endopeptidase -
  ABLB98_RS02560 (ABLB98_02555) - 535493..536572 (+) 1080 WP_005088778.1 beta family protein -
  ABLB98_RS02565 (ABLB98_02560) - 536511..537113 (-) 603 WP_005088780.1 sce7726 family protein -
  ABLB98_RS02570 (ABLB98_02565) - 537367..538041 (+) 675 WP_369028934.1 TOPRIM nucleotidyl transferase/hydrolase domain-containing protein -
  ABLB98_RS02575 (ABLB98_02570) - 538007..539044 (+) 1038 WP_256731750.1 ATP-dependent helicase -
  ABLB98_RS02580 (ABLB98_02575) - 539031..539909 (+) 879 WP_256413857.1 3'-5' exonuclease -
  ABLB98_RS02585 (ABLB98_02580) - 540028..540879 (+) 852 WP_069120389.1 thymidylate synthase -
  ABLB98_RS02590 (ABLB98_02585) - 540957..541457 (-) 501 WP_069120387.1 hypothetical protein -
  ABLB98_RS02595 (ABLB98_02590) - 541454..543556 (-) 2103 WP_178883238.1 site-specific integrase -
  ABLB98_RS02600 (ABLB98_02595) - 543556..546423 (-) 2868 WP_178883237.1 site-specific integrase -
  ABLB98_RS02605 (ABLB98_02600) - 546420..547655 (-) 1236 WP_004668611.1 tyrosine-type recombinase/integrase -
  ABLB98_RS02610 (ABLB98_02605) thyA 547796..548356 (-) 561 Protein_499 thymidylate synthase -
  ABLB98_RS02615 (ABLB98_02610) - 548529..549353 (+) 825 WP_348883457.1 YwqG family protein -
  ABLB98_RS02620 (ABLB98_02615) - 549399..549974 (-) 576 WP_004658926.1 xanthine phosphoribosyltransferase -
  ABLB98_RS02625 (ABLB98_02620) - 550063..550707 (-) 645 WP_348883461.1 DUF3108 domain-containing protein -
  ABLB98_RS02630 (ABLB98_02625) - 550963..551643 (-) 681 WP_348883456.1 hypothetical protein -
  ABLB98_RS02635 (ABLB98_02630) tonB2 551887..552774 (+) 888 WP_348883455.1 TonB family protein Machinery gene
  ABLB98_RS02640 (ABLB98_02635) - 552910..553152 (-) 243 WP_348883454.1 antibiotic biosynthesis monooxygenase -
  ABLB98_RS02645 (ABLB98_02640) ybeY 553220..553705 (-) 486 WP_348883453.1 rRNA maturation RNase YbeY -
  ABLB98_RS02650 (ABLB98_02645) - 553779..554855 (-) 1077 WP_348883452.1 PhoH family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33497.16 Da        Isoelectric Point: 8.0761

>NTDB_id=1006836 ABLB98_RS02635 WP_348883455.1 551887..552774(+) (tonB2) [Acinetobacter sp. XH1639]
MLKKLNFQTSSLLHWWKDPVFLGAIVFAACLHGVTLSIKFGMPSPTDTSTKEIAVTVRTSQEKVKDADFLAQADQKGSGE
FRQQHLMSSDMPSPMEADATTGESELESLEKVQQKRELKFEEKVLMTVLSWQKQVEQTERKKTLDELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDEAKQQHLSGEVRLMVILNAQGGIRAIRL
IEGSGHAILDDAAKASVRRGAPFGPFDNDMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=1006836 ABLB98_RS02635 WP_348883455.1 551887..552774(+) (tonB2) [Acinetobacter sp. XH1639]
ATGTTGAAGAAATTAAATTTTCAAACCAGCTCGCTATTGCACTGGTGGAAAGACCCTGTATTTTTGGGGGCAATTGTTTT
TGCAGCATGTTTGCATGGAGTAACCCTGTCCATAAAATTTGGAATGCCATCACCGACCGATACCTCAACCAAAGAAATTG
CAGTTACGGTTCGTACAAGTCAAGAAAAAGTCAAAGATGCCGACTTTTTGGCGCAAGCTGACCAAAAGGGTTCTGGTGAG
TTCCGTCAGCAACACCTTATGTCGAGTGACATGCCCTCACCGATGGAAGCAGATGCGACAACAGGAGAGTCTGAGCTCGA
AAGTTTAGAGAAAGTCCAGCAAAAACGAGAATTAAAATTTGAAGAAAAAGTGCTCATGACGGTTTTAAGCTGGCAGAAGC
AAGTAGAGCAAACTGAACGTAAAAAAACCTTAGATGAGTTACAGAGTCAATTTCAAGCCAAAGCCGCGATGGTTGCGAGT
TTGGAAGCACAATATTTACAACGTCAGCAAAATTTTAGTCGTAAACAGCGTATTAAAACAGTAGATGGGATTCAGGCAAA
ACAAGATGCGTCAGCAGCTTATCTTGATAAATTTCGTCAGAAAGTTGAACTATACGGTAATCGTTATTATCCAGATGAAG
CGAAACAACAACATTTATCGGGTGAAGTACGTTTAATGGTGATCCTGAATGCACAGGGGGGTATCCGTGCCATTCGTCTC
ATTGAAGGCTCAGGACATGCGATTCTGGATGATGCGGCAAAAGCTTCGGTGCGCCGTGGAGCACCTTTTGGACCCTTTGA
TAATGATATGAAAAAGGACATTTCTGAATTGCGAATTATTCGAACATGGCGCTTTGATCCTGTCGATGCGGAATTTGAAG
TACATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.22

100

0.732

Multiple sequence alignment