Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABLB98_RS01130 Genome accession   NZ_CP157435
Coordinates   236013..237578 (-) Length   521 a.a.
NCBI ID   WP_348883480.1    Uniprot ID   A0AB39KIL7
Organism   Acinetobacter sp. XH1639     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 231013..242578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS01115 (ABLB98_01115) - 232160..233335 (+) 1176 WP_087545139.1 S41 family peptidase -
  ABLB98_RS01120 (ABLB98_01120) - 233354..234444 (-) 1091 Protein_211 IS4-like element ISAba33 family transposase -
  ABLB98_RS01125 (ABLB98_01125) pilR 234566..235990 (-) 1425 WP_348883479.1 sigma-54 dependent transcriptional regulator Regulator
  ABLB98_RS01130 (ABLB98_01130) pilS 236013..237578 (-) 1566 WP_348883480.1 ATP-binding protein Regulator
  ABLB98_RS01135 (ABLB98_01135) - 237598..238233 (-) 636 WP_005163158.1 response regulator -
  ABLB98_RS01140 (ABLB98_01140) pbpG 238444..239511 (+) 1068 WP_143225221.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLB98_RS01145 (ABLB98_01145) - 239684..240453 (+) 770 Protein_216 hypothetical protein -
  ABLB98_RS01150 (ABLB98_01150) thrC 240523..241662 (-) 1140 WP_348883481.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59386.38 Da        Isoelectric Point: 6.8099

>NTDB_id=1006829 ABLB98_RS01130 WP_348883480.1 236013..237578(-) (pilS) [Acinetobacter sp. XH1639]
MLGKIASSVSQTVYRLGIWYSGYRLIISISLILIYLLTAEQLATNYDYPFLYFYTLICYISFNIFQLFLLKIVPLQISKQ
LIFIFIIDVICLSVITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIVTLFAVIMVVYQCFLGNFFDYTNLNNLGNSAL
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDTSNHIVLSNPAANRLLGIHIPVSPE
KTPLLKWQPDLFELIKFSDLEDGEEFSFESQQSPYTINIRVKHLIVPEQSLILLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKESDSHQQEMLCRMISKQARRIDNIVQDTLGMARNKPTEPQVIQLADFFESLLNEDLVDAK
HMIKLNLAERINILFDEKQLRQVLINLIRNALRHNAADAEHIEVQVHLKEGRTCIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYVERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1006829 ABLB98_RS01130 WP_348883480.1 236013..237578(-) (pilS) [Acinetobacter sp. XH1639]
ATGTTGGGAAAAATTGCGTCCTCAGTGTCCCAAACCGTTTATCGGCTCGGAATTTGGTATAGTGGATATCGACTGATTAT
TTCAATCAGTCTAATCCTTATTTACTTACTTACCGCAGAGCAGCTTGCTACCAATTATGATTATCCATTTTTATATTTTT
ACACTCTGATTTGTTATATCAGCTTTAATATTTTTCAGCTTTTTTTACTAAAAATAGTTCCATTACAAATCAGCAAACAA
CTCATTTTTATTTTTATTATAGACGTGATCTGTTTAAGTGTGATTACCTTTTCGGCAGGTGGTCCGAATTTACAATTAAG
CTTATTGTACGTCATCATTATTTTCTCCTCAGCAATTCTCCTAAATGCTCATCTTTCACTGATTGTGACGCTTTTTGCCG
TTATTATGGTTGTTTATCAATGTTTTCTGGGCAACTTTTTTGATTATACCAATCTAAATAATCTTGGTAATAGCGCATTA
CTTGCATTCTTATTTTTTGTAGTACACGCAATTGGTCGTATTGCCGTTCAACGCTTTAAGATTTTAGAAACACTCACTTT
TCATCAGTCGATTGAAATTCATCAGCTGCAAAATATTAACCGCTATATTTTGGAGCAAATCGAAGATGGTTACTTGGTTT
TAGATACCAGTAACCATATCGTACTGAGTAACCCAGCCGCTAATAGATTATTAGGCATTCATATTCCTGTTTCTCCTGAA
AAAACACCATTACTCAAATGGCAACCTGACTTATTCGAGTTAATTAAATTTAGTGACTTAGAAGATGGTGAGGAATTTAG
TTTTGAATCACAACAAAGTCCTTACACAATCAATATCCGTGTTAAACACCTAATCGTCCCCGAACAATCATTAATTTTAC
TTATCTTGAAAGATGCACAAAAACTCACGCAACAAGTCCAGCAATTGAAACTGGCGGCTTTAGGACAGCTCTCAGCCAGT
ATTGCCCACGAAATTCGCAACCCTCTGGCTGCAATTGTACAGGCCAATGAATTATTTAAAGAAAGTGACAGTCATCAACA
AGAAATGCTCTGTCGTATGATTAGCAAACAAGCTAGACGTATTGATAATATTGTGCAAGATACATTAGGCATGGCGCGCA
ACAAACCAACTGAGCCACAAGTCATTCAATTGGCTGATTTTTTTGAGAGCCTATTGAATGAAGATCTAGTCGATGCGAAA
CATATGATTAAACTCAATCTTGCAGAACGCATTAATATTCTTTTTGATGAGAAACAATTACGCCAAGTTCTAATTAACCT
GATTCGTAATGCTTTGAGGCATAATGCCGCAGATGCCGAACATATTGAGGTGCAGGTACATTTAAAAGAGGGCCGAACCT
GTATTGATGTGATTGATTTTGGTACGGGTGTCGCAAAACGAGATATTTCTCAGCTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACCTGTCTCACACCTTTTGTGAGGCAAATCATGCAAAGCTCACTTACGTAGAGCG
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

64.922

99.04

0.643

Multiple sequence alignment