Detailed information NTG1006828

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABLB98_RS01125
• Genome accession: NZ_CP157435
• Coordinates: 234566..235990 (-)
• Length: 474 a.a.
• NCBI ID: WP_348883479.1
• Uniprot ID: A0AB39KJ59
• Organism: Acinetobacter sp. XH1639
• Function: regulation of type IV pilus assembly (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	233354..234447	234566..235990	flank	119

Gene organization within MGE regions

Location: 233354..235990

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLB98_RS01120 (ABLB98_01120)	-	233354..234444 (-)	1091	Protein_211	IS4-like element ISAba33 family transposase	-
ABLB98_RS01125 (ABLB98_01125)	pilR	234566..235990 (-)	1425	WP_348883479.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 53144.01 Da
• Isoelectric Point: 6.1058

>NTDB_id=1006828 ABLB98_RS01125 WP_348883479.1 234566..235990(-) (pilR) [Acinetobacter sp. XH1639]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAAESALENKLFIGRSTPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWEVSVKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSPIATPTVSFSTQ
DENDHAVSTSPMGSKKLPSEGLELYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide

• Length: 1425 bp

>NTDB_id=1006828 ABLB98_RS01125 WP_348883479.1 234566..235990(-) (pilR) [Acinetobacter sp. XH1639]
ATGGCAACTAAACAACCACTCGTCTTGCTAGTAGACGATGAAGAAGACTTATGTCTCCTCATGCAAATGACGCTTGCACG
AATGGGGATTAAAACCCATCTTGCCTATCGTGTAGAGCAAGCAAAAAAATTCTTTACCGAATTTCAGTATGATGCCTGTT
TAACAGACCTGAACCTTCCAGATGGCAATGGTCTCGATTTAGTTAAACATGTAACGCAGAACTATCCCAACACACCGATT
GCGGTACTGACAGCCTATGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAAACTCATTTAGATCAATTGATTCAAAAAGCATTGAATCGACCACAGCCTGAACAAGAAGCTGCTGAAAGCG
CATTAGAAAATAAACTGTTCATTGGTCGATCTACGCCCATTCAGCAATTACGGATTGCTTTAAAGAAAATTGCTCGATCT
CAAGCCCCTGTCTTTATTACCGGTGAATCAGGGACAGGAAAAGAAGTTGTTGCCAATTTAGTTCATCGTCTGAGTAACCG
TAGTGAAGGACCTTTTATTGCGATCAACTGTGGTGCTATTCCAACAGAGTTAATGGAAAGTGAACTATTTGGTCATAAAA
AAGGCAGCTTTACAGGCGCAACCCAAGACAAACAAGGTTTAATTCTTTCCGCACATGGGGGTAGTTTATTCTTAGATGAG
ATCGCTGAATTACCCTTAAGTATGCAGGTAAAACTGCTTCGTGCTGTACAAGAAAAGAAAATTCGCCCTGTCGGCTCAGA
TCAAGAAATTGATGTTGATTTCCGGGTCATCAGTGCGAGTCATCAAGATCTTGAATTACTAGTGCAACAAGGTCGTTTTA
GACAAGATTTATTTTTCCGTATTCACGTCATGGATATTGTGCTTCCACCATTACGCGAACGTGGGCAAGATATCTTATTG
TTAGCAAATCACTTTATTCAGAAAATCAGCCAAGAATGGGAAGTCTCTGTCAAAACCCTTTCTTCTCGTGCTGAACAATT
CTTATTGCAACAATATTTTCCAGGTAATGTACGCGAGCTTCGAAATATTATTGAACGTGCAATTACGCTCAGTGATGATG
AAACCATTGATCTAGCTCATCTACAAACAGCTCCTCTACGTAGCCCTATTGCAACGCCAACAGTCTCATTTTCAACACAA
GATGAAAATGATCATGCGGTAAGCACTAGCCCTATGGGTTCTAAAAAGCTACCATCTGAAGGACTGGAGCTCTATTTAGA
AAATATTGAAAAAGAGATTCTTCTCAATGCACTGAATTTAACCCATTGGAACCGAACGTTAGCAGCAAAGAAATTAGGAA
TGACTTTCCGTTCTTTACGTTATCGTTTGAAAAAATTTGGTTTAGATACAGAAGATGATGAATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-117)

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (426-466)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Acinetobacter baumannii strain A118	83.755	100	0.838
pilR	Pseudomonas aeruginosa PAK	50	97.468	0.487