Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABLC00_RS16550 Genome accession   NZ_CP157432
Coordinates   3537872..3538507 (+) Length   211 a.a.
NCBI ID   WP_031982346.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3532872..3543507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS16535 (ABLC00_16535) adeT2 3533932..3534918 (-) 987 WP_004711792.1 putative multidrug efflux protein AdeT2 -
  ABLC00_RS16540 (ABLC00_16540) - 3534998..3535813 (-) 816 WP_006580703.1 NAD(P)H-binding protein -
  ABLC00_RS16545 (ABLC00_16545) recG 3535834..3537879 (+) 2046 WP_004884596.1 ATP-dependent DNA helicase RecG -
  ABLC00_RS16550 (ABLC00_16550) comF 3537872..3538507 (+) 636 WP_031982346.1 ComF family protein Machinery gene
  ABLC00_RS16555 (ABLC00_16555) - 3538510..3538911 (-) 402 WP_033846993.1 NUDIX domain-containing protein -
  ABLC00_RS16560 (ABLC00_16560) - 3538926..3539507 (-) 582 WP_002049746.1 TIGR00730 family Rossman fold protein -
  ABLC00_RS16565 (ABLC00_16565) - 3539665..3540678 (+) 1014 WP_002049699.1 CorA family divalent cation transporter -
  ABLC00_RS16570 (ABLC00_16570) - 3540753..3541040 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  ABLC00_RS16575 (ABLC00_16575) - 3541052..3541693 (-) 642 WP_002049753.1 phospholipid-binding protein MlaC -
  ABLC00_RS16580 (ABLC00_16580) - 3541720..3542403 (-) 684 WP_002049738.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABLC00_RS16585 (ABLC00_16585) mlaE 3542403..3543179 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24628.85 Da        Isoelectric Point: 9.9089

>NTDB_id=1006814 ABLC00_RS16550 WP_031982346.1 3537872..3538507(+) (comF) [Acinetobacter nosocomialis strain XH1679]
MFKLFNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTVQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQIKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNERSQKGLSRLERFENIEQQFVAM
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIYASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1006814 ABLC00_RS16550 WP_031982346.1 3537872..3538507(+) (comF) [Acinetobacter nosocomialis strain XH1679]
ATGTTTAAGTTGTTCAACCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTATTATGTGAAATAGGAACACGGGAAAA
ATATTCACTTTGTAAAGAATGTTGGGAACAACTACCGTGGCTTAAGCAAACAGTTCAGCGCAATGATCAATCTGTTCTTG
TGGCTTGCCACTACGCATATCCAATTAATCGCATAATTCAGCAGTTCAAATATGAACAAAAATTACACTATCAAACCTTA
CTTGCCGAAGTCTTACAGCAAATAAAATTTCCTAAGGTACAAGCCATAGTACCTATGCCTATTTCTAAACAACGCTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAAACTTTTAAGTAAACAATTAAAAATACCTGTTTGGCAGCCTGTGC
AGCGCCTAAATGAACGCTCTCAAAAAGGATTGTCTCGCCTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATG
ACTCAAGAAAAACGGCGTTACCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCACTAAAACAGCTAGGGTGCACATCTATTTATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

96.209

100

0.962
  comF Acinetobacter baumannii D1279779

95.261

100

0.953

Multiple sequence alignment