Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | ABLC00_RS08355 | Genome accession | NZ_CP157432 |
| Coordinates | 1803145..1803525 (+) | Length | 126 a.a. |
| NCBI ID | WP_004887479.1 | Uniprot ID | - |
| Organism | Acinetobacter nosocomialis strain XH1679 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1798145..1808525
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABLC00_RS08325 (ABLC00_08325) | kdsB | 1799050..1799811 (+) | 762 | WP_004887485.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| ABLC00_RS08330 (ABLC00_08330) | - | 1799823..1800803 (+) | 981 | WP_004887483.1 | DNA polymerase III subunit delta' | - |
| ABLC00_RS08335 (ABLC00_08335) | - | 1800816..1801157 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| ABLC00_RS08340 (ABLC00_08340) | - | 1801175..1801948 (+) | 774 | WP_004887481.1 | TatD family hydrolase | - |
| ABLC00_RS08345 (ABLC00_08345) | - | 1801986..1802594 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| ABLC00_RS08350 (ABLC00_08350) | - | 1802604..1803155 (+) | 552 | WP_002049902.1 | type II secretion system protein | - |
| ABLC00_RS08355 (ABLC00_08355) | xcpV | 1803145..1803525 (+) | 381 | WP_004887479.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| ABLC00_RS08360 (ABLC00_08360) | xcpW | 1803525..1804340 (+) | 816 | WP_033846335.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| ABLC00_RS08365 (ABLC00_08365) | gspK | 1804340..1805299 (+) | 960 | WP_004887476.1 | type II secretion system minor pseudopilin GspK | - |
| ABLC00_RS08370 (ABLC00_08370) | - | 1805529..1806125 (+) | 597 | WP_004887474.1 | 6-carboxytetrahydropterin synthase | - |
| ABLC00_RS08375 (ABLC00_08375) | ung | 1806176..1806889 (+) | 714 | WP_002049829.1 | uracil-DNA glycosylase | - |
| ABLC00_RS08380 (ABLC00_08380) | - | 1806886..1808010 (+) | 1125 | WP_006580787.1 | enoyl-CoA hydratase/isomerase family protein | - |
| ABLC00_RS08385 (ABLC00_08385) | tadA | 1808017..1808520 (+) | 504 | WP_006580788.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14024.27 Da Isoelectric Point: 9.7155
>NTDB_id=1006805 ABLC00_RS08355 WP_004887479.1 1803145..1803525(+) (xcpV) [Acinetobacter nosocomialis strain XH1679]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQTKQVTSQGETWQI
YKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQTKQVTSQGETWQI
YKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=1006805 ABLC00_RS08355 WP_004887479.1 1803145..1803525(+) (xcpV) [Acinetobacter nosocomialis strain XH1679]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGCTGCAGGGCACTCAAACTAAGCAAGTAACTTCTCAAGGAGAGACTTGGCAGATT
TATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGCTGCAGGGCACTCAAACTAAGCAAGTAACTTCTCAAGGAGAGACTTGGCAGATT
TATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
95.238 |
100 |
0.952 |