Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABLC00_RS01525 Genome accession   NZ_CP157432
Coordinates   321431..321757 (+) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter nosocomialis strain XH1679     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 316431..326757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS01500 (ABLC00_01500) hemC 317048..317965 (+) 918 WP_193786317.1 hydroxymethylbilane synthase -
  ABLC00_RS01505 (ABLC00_01505) - 317970..318737 (+) 768 WP_031956188.1 uroporphyrinogen-III synthase -
  ABLC00_RS01510 (ABLC00_01510) - 318746..319585 (+) 840 WP_031956189.1 hypothetical protein -
  ABLC00_RS01515 (ABLC00_01515) - 319595..320788 (+) 1194 WP_033846938.1 hypothetical protein -
  ABLC00_RS01520 (ABLC00_01520) - 320796..321236 (+) 441 WP_016803694.1 thioesterase family protein -
  ABLC00_RS01525 (ABLC00_01525) hns 321431..321757 (+) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABLC00_RS01530 (ABLC00_01530) gspN 322089..322832 (+) 744 WP_004710896.1 type II secretion system protein N -
  ABLC00_RS01535 (ABLC00_01535) - 322832..323668 (+) 837 WP_033846939.1 type II secretion system protein N -
  ABLC00_RS01540 (ABLC00_01540) gspD 323710..325986 (+) 2277 WP_044423594.1 type II secretion system secretin GspD -
  ABLC00_RS01545 (ABLC00_01545) - 326027..326656 (+) 630 WP_004710890.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1006790 ABLC00_RS01525 WP_002053185.1 321431..321757(+) (hns) [Acinetobacter nosocomialis strain XH1679]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1006790 ABLC00_RS01525 WP_002053185.1 321431..321757(+) (hns) [Acinetobacter nosocomialis strain XH1679]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCATATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGCTACCGTAACAAAAACAACTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAGGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991

Multiple sequence alignment