Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPW48_RS07690 Genome accession   NZ_LR738720
Coordinates   1514626..1515360 (-) Length   244 a.a.
NCBI ID   WP_014637571.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509626..1520360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS07655 - 1509734..1510561 (-) 828 WP_022540576.1 class C sortase -
  GPW48_RS07660 - 1510529..1510918 (+) 390 Protein_1453 transposase -
  GPW48_RS07665 - 1510919..1511305 (-) 387 WP_024417621.1 hypothetical protein -
  GPW48_RS07670 lepB 1511324..1511926 (-) 603 WP_171840853.1 signal peptidase I -
  GPW48_RS07675 - 1511916..1512209 (-) 294 WP_002938694.1 hypothetical protein -
  GPW48_RS07685 - 1513648..1514496 (-) 849 WP_015646548.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  GPW48_RS07690 amiE 1514626..1515360 (-) 735 WP_014637571.1 amino acid ABC transporter ATP-binding protein Regulator
  GPW48_RS07695 - 1515353..1516042 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  GPW48_RS07700 - 1516168..1516398 (-) 231 WP_002938704.1 DUF1797 family protein -
  GPW48_RS07705 clpE 1516622..1518850 (+) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GPW48_RS07710 - 1519036..1519497 (+) 462 WP_002938708.1 NUDIX hydrolase -
  GPW48_RS07715 - 1519552..1519860 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26908.18 Da        Isoelectric Point: 4.8166

>NTDB_id=1006789 GPW48_RS07690 WP_014637571.1 1514626..1515360(-) (amiE) [Streptococcus suis isolate GD-0001]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVKFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1006789 GPW48_RS07690 WP_014637571.1 1514626..1515360(-) (amiE) [Streptococcus suis isolate GD-0001]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTTGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTAAATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAGCGAATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365