Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GPW48_RS07145 Genome accession   NZ_LR738720
Coordinates   1397578..1398174 (-) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis isolate GD-0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392578..1403174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS07120 - 1393219..1393539 (+) 321 WP_024386539.1 transposase -
  GPW48_RS07125 - 1393536..1394423 (+) 888 WP_074390184.1 IS3 family transposase -
  GPW48_RS07130 - 1394469..1395830 (-) 1362 WP_074390099.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GPW48_RS07135 - 1395959..1396339 (-) 381 WP_023369702.1 OsmC family protein -
  GPW48_RS07140 - 1396427..1397473 (-) 1047 WP_023369700.1 D-alanine--D-alanine ligase -
  GPW48_RS07145 recR 1397578..1398174 (-) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  GPW48_RS07150 pbp2b 1398183..1400258 (-) 2076 WP_024405652.1 penicillin-binding protein PBP2B -
  GPW48_RS07155 - 1400350..1400730 (-) 381 Protein_1353 ATP-binding cassette domain-containing protein -
  GPW48_RS07160 vicX 1401092..1401895 (-) 804 WP_023369694.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=1006783 GPW48_RS07145 WP_002935848.1 1397578..1398174(-) (recR) [Streptococcus suis isolate GD-0001]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1006783 GPW48_RS07145 WP_002935848.1 1397578..1398174(-) (recR) [Streptococcus suis isolate GD-0001]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTGGAGGATAGTCGTGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCTATGTATATCTCACGTGTCCTT
AAACCTGCGGGAATCAAAGTGACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49