Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   GPW48_RS06185 Genome accession   NZ_LR738720
Coordinates   1195358..1195840 (+) Length   160 a.a.
NCBI ID   WP_024388981.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1190358..1200840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS06160 - 1191607..1192917 (-) 1311 WP_002938090.1 GntP family permease -
  GPW48_RS06165 folK 1192967..1193455 (-) 489 WP_074390248.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  GPW48_RS06170 folB 1193452..1193814 (-) 363 WP_074390247.1 dihydroneopterin aldolase -
  GPW48_RS06175 folP 1193807..1194619 (-) 813 WP_074390246.1 dihydropteroate synthase -
  GPW48_RS06180 folE 1194628..1195191 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  GPW48_RS06185 mutX 1195358..1195840 (+) 483 WP_024388981.1 NUDIX hydrolase Machinery gene
  GPW48_RS06190 - 1195888..1196565 (-) 678 WP_074390245.1 DUF4956 domain-containing protein -
  GPW48_RS06195 - 1196552..1197295 (-) 744 WP_074390244.1 polyphosphate polymerase domain-containing protein -
  GPW48_RS06200 - 1197488..1197790 (+) 303 WP_024416545.1 hypothetical protein -
  GPW48_RS06205 - 1197811..1198077 (-) 267 WP_024413100.1 DUF2087 domain-containing protein -
  GPW48_RS06210 pheT 1198132..1200531 (-) 2400 WP_074390243.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18525.83 Da        Isoelectric Point: 4.4791

>NTDB_id=1006776 GPW48_RS06185 WP_024388981.1 1195358..1195840(+) (mutX) [Streptococcus suis isolate GD-0001]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDNLLDYSVNFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1006776 GPW48_RS06185 WP_024388981.1 1195358..1195840(+) (mutX) [Streptococcus suis isolate GD-0001]
ATGACCAAGAAACCCGTCCAACTCGCTACCATTTGCTACATTGATAATGGCAAGGAATTTCTCCTGCTCCATCGCAATAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGTAAACTAGAACCTGGTGAAACACCGCAAGCCTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACGAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACTGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAATGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACCTGGGAAGGGGACAGACATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGTTTCCGCTATGATGGGGATAACTTGCTGGATTACAGTGTTAATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

79.739

95.625

0.763

Multiple sequence alignment