Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABLB96_RS05630 Genome accession   NZ_CP157428
Coordinates   1168842..1169252 (+) Length   136 a.a.
NCBI ID   WP_348895535.1    Uniprot ID   -
Organism   Acinetobacter sp. XH1741     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1163842..1174252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS05615 (ABLB96_05620) - 1164829..1167135 (+) 2307 WP_348895538.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABLB96_RS05620 (ABLB96_05625) - 1167180..1167953 (-) 774 WP_348895537.1 SDR family oxidoreductase -
  ABLB96_RS05625 (ABLB96_05630) mazG 1168067..1168873 (+) 807 WP_348895536.1 nucleoside triphosphate pyrophosphohydrolase -
  ABLB96_RS05630 (ABLB96_05635) comEA 1168842..1169252 (+) 411 WP_348895535.1 ComEA family DNA-binding protein Machinery gene
  ABLB96_RS05635 (ABLB96_05640) pcnB 1169378..1170844 (+) 1467 WP_348895534.1 polynucleotide adenylyltransferase PcnB -
  ABLB96_RS05640 (ABLB96_05645) folK 1170841..1171323 (+) 483 WP_348895533.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABLB96_RS05645 (ABLB96_05650) panB 1171369..1172178 (+) 810 WP_032047472.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABLB96_RS05650 (ABLB96_05655) panC 1172182..1173030 (+) 849 WP_348895532.1 pantoate--beta-alanine ligase -
  ABLB96_RS05655 (ABLB96_05660) rapZ 1173053..1173904 (+) 852 WP_348895531.1 RNase adapter RapZ -
  ABLB96_RS05660 (ABLB96_05665) - 1173901..1174170 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15742.03 Da        Isoelectric Point: 10.7219

>NTDB_id=1006769 ABLB96_RS05630 WP_348895535.1 1168842..1169252(+) (comEA) [Acinetobacter sp. XH1741]
MRFSMRLCKNKCFILIMMFLSGISSSVFAQSFDQNFQEWKTKQHMYDQKLNIHKSSRSDHSKNSQRNNFSDSTGQINLNQ
ASVNEFRQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLVL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1006769 ABLB96_RS05630 WP_348895535.1 1168842..1169252(+) (comEA) [Acinetobacter sp. XH1741]
ATGCGATTCAGCATGAGACTTTGCAAGAATAAGTGTTTTATTTTAATAATGATGTTTTTGAGTGGTATTTCATCATCAGT
TTTTGCTCAATCTTTTGATCAGAACTTTCAAGAGTGGAAGACTAAACAGCATATGTATGACCAAAAATTAAACATACATA
AGTCTTCACGTTCTGATCATTCAAAAAATTCTCAAAGAAACAATTTTAGTGATTCTACAGGGCAAATTAATTTAAATCAG
GCCTCTGTAAATGAGTTCCGGCAGTTAAAAGGAGTCGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACCGACAAAAGAA
TGGTAGTTTTAAAAATATTGATGAAATTAAAAATGTAAAAGGAATCGGGCCAGCTATTTTTGAAAAAAATAAATCCCGGC
TAGTTTTATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

80.882

100

0.809
  comEA Acinetobacter baumannii D1279779

80.147

100

0.801
  comEA Acinetobacter baylyi ADP1

50

80.882

0.404

Multiple sequence alignment