Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GPW48_RS05380 Genome accession   NZ_LR738720
Coordinates   1036729..1037394 (-) Length   221 a.a.
NCBI ID   WP_024405695.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1031729..1042394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS10750 - 1032375..1032668 (+) 294 WP_226319149.1 adenylyl-sulfate kinase -
  GPW48_RS10755 - 1032665..1032901 (+) 237 WP_226319150.1 hypothetical protein -
  GPW48_RS05365 xerS 1033068..1034138 (+) 1071 WP_024405698.1 tyrosine recombinase XerS Machinery gene
  GPW48_RS05370 - 1034208..1035716 (-) 1509 WP_024405697.1 phosphoglucomutase -
  GPW48_RS05375 - 1035791..1036732 (-) 942 WP_024405696.1 sensor histidine kinase -
  GPW48_RS05380 braR 1036729..1037394 (-) 666 WP_024405695.1 DNA-binding response regulator Regulator
  GPW48_RS05385 - 1037436..1037702 (-) 267 WP_024405694.1 type II toxin-antitoxin system RelE family toxin -
  GPW48_RS05390 relB 1037686..1037937 (-) 252 WP_012775104.1 type II toxin-antitoxin system RelB family antitoxin -
  GPW48_RS05395 - 1038029..1039999 (-) 1971 WP_024405693.1 ABC transporter permease -
  GPW48_RS05400 - 1040000..1040752 (-) 753 WP_011922409.1 ABC transporter ATP-binding protein -
  GPW48_RS05405 - 1040773..1041150 (-) 378 WP_011922413.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  GPW48_RS05410 - 1041163..1041303 (-) 141 WP_012775106.1 hypothetical protein -
  GPW48_RS05415 tnpA 1041545..1042018 (-) 474 WP_024378560.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25433.19 Da        Isoelectric Point: 4.7792

>NTDB_id=1006769 GPW48_RS05380 WP_024405695.1 1036729..1037394(-) (braR) [Streptococcus suis isolate GD-0001]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1006769 GPW48_RS05380 WP_024405695.1 1036729..1037394(-) (braR) [Streptococcus suis isolate GD-0001]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTAGGGTTAATCAATTCAGCAAATCAACCGATTTGTCTATCGACCAAT
TCCAGCTTAGTTTGGACGGACGATTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475

Multiple sequence alignment