Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   ABLB96_RS05215 Genome accession   NZ_CP157428
Coordinates   1080758..1081558 (+) Length   266 a.a.
NCBI ID   WP_348895605.1    Uniprot ID   A0AB39K440
Organism   Acinetobacter sp. XH1741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075758..1086558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS05190 (ABLB96_05195) - 1076664..1077962 (+) 1299 WP_348895686.1 glycosyltransferase family 1 protein -
  ABLB96_RS05195 (ABLB96_05200) - 1077987..1078538 (+) 552 WP_348895607.1 phosphatase PAP2 family protein -
  ABLB96_RS05200 (ABLB96_05205) iscX 1078638..1078838 (+) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  ABLB96_RS05205 (ABLB96_05210) ndk 1078952..1079383 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  ABLB96_RS05210 (ABLB96_05215) rlmN 1079507..1080742 (+) 1236 WP_348895606.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABLB96_RS05215 (ABLB96_05220) pilF 1080758..1081558 (+) 801 WP_348895605.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ABLB96_RS05220 (ABLB96_05225) - 1081549..1082340 (+) 792 WP_348895604.1 RodZ domain-containing protein -
  ABLB96_RS05225 (ABLB96_05230) ispG 1082362..1083477 (+) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  ABLB96_RS05230 (ABLB96_05235) hisS 1083474..1084766 (+) 1293 WP_348895602.1 histidine--tRNA ligase -
  ABLB96_RS05235 (ABLB96_05240) - 1084795..1085493 (+) 699 WP_348895601.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30120.48 Da        Isoelectric Point: 9.0211

>NTDB_id=1006768 ABLB96_RS05215 WP_348895605.1 1080758..1081558(+) (pilF) [Acinetobacter sp. XH1741]
MSTPKLKIMLCMGVAVAFLASGCQTSPTLKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSIESRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVHTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1006768 ABLB96_RS05215 WP_348895605.1 1080758..1081558(+) (pilF) [Acinetobacter sp. XH1741]
TTGAGTACTCCGAAGTTAAAGATCATGTTATGTATGGGGGTTGCTGTTGCATTTCTGGCAAGTGGTTGTCAGACGTCGCC
AACGCTTAAAAAGGACCCAGAAAAAGCAGTTAAGGTGCGTACGCAGCTTGCTGCTGAATACATTCGTTCTGGTGACTTGG
ACTCTGCAAAACGGTCCCTTGACCAAGCTCTAAGTATCGAGAGTCGTGACGCAACAGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAACGTGCAATTTCTTCTGAGCCAGACAA
TGCTCAGGCGCGTAATAATTATGGTACGTATTTGTATCAAATGGAGCGTTATAATGATGCCATCGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGACCAACGCTATCAGGCTTTAGAAAATCTAGGACGGATTTATTTAAAGTTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCGCTTCTTGCTAACCGCGATTCCTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATACGTTCATACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(149-205)

Tetratricopeptide repeat (TPR_16)

(89-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

97.744

100

0.977
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726

Multiple sequence alignment