Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABLB96_RS00610 Genome accession   NZ_CP157428
Coordinates   107458..108093 (+) Length   211 a.a.
NCBI ID   WP_348895715.1    Uniprot ID   A0AB39JY63
Organism   Acinetobacter sp. XH1741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102458..113093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS00595 (ABLB96_00595) - 103518..104504 (-) 987 WP_348895712.1 putative solute-binding protein -
  ABLB96_RS00600 (ABLB96_00600) - 104584..105399 (-) 816 WP_348895713.1 NAD-dependent epimerase/dehydratase family protein -
  ABLB96_RS00605 (ABLB96_00605) recG 105420..107465 (+) 2046 WP_348895714.1 ATP-dependent DNA helicase RecG -
  ABLB96_RS00610 (ABLB96_00610) comF 107458..108093 (+) 636 WP_348895715.1 phosphoribosyltransferase family protein Machinery gene
  ABLB96_RS00615 (ABLB96_00615) - 108096..108497 (-) 402 WP_348895717.1 NUDIX domain-containing protein -
  ABLB96_RS00620 (ABLB96_00620) - 108512..109093 (-) 582 WP_348895718.1 TIGR00730 family Rossman fold protein -
  ABLB96_RS00625 (ABLB96_00625) - 109251..110264 (+) 1014 WP_348895719.1 magnesium and cobalt transport protein CorA -
  ABLB96_RS00630 (ABLB96_00630) - 110339..110626 (-) 288 WP_196085716.1 lipid asymmetry maintenance protein MlaB -
  ABLB96_RS00635 (ABLB96_00635) - 110638..111279 (-) 642 WP_348895720.1 ABC transporter substrate-binding protein -
  ABLB96_RS00640 (ABLB96_00640) - 111306..111989 (-) 684 WP_348895721.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ABLB96_RS00645 (ABLB96_00645) mlaE 111989..112765 (-) 777 WP_348895722.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24599.84 Da        Isoelectric Point: 9.8973

>NTDB_id=1006744 ABLB96_RS00610 WP_348895715.1 107458..108093(+) (comF) [Acinetobacter sp. XH1741]
MFKLFSPQYLFQLLSPCLLCEIGTRDKYSLCKECWEQLPWLKQSIQRNHQSVLVACHYVYPLNQIIQQFKYEQKLHYQTL
LGEILQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLAKLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAI
KQEKRRYRRVLIIDDVITTGSSIYALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1006744 ABLB96_RS00610 WP_348895715.1 107458..108093(+) (comF) [Acinetobacter sp. XH1741]
ATGTTTAAGTTGTTCAGCCCTCAATATCTTTTTCAGTTATTGTCCCCTTGCCTGTTATGTGAAATAGGAACGCGGGACAA
GTACTCGCTTTGCAAAGAATGTTGGGAACAACTACCGTGGCTTAAACAGTCTATCCAACGTAATCATCAATCTGTTCTGG
TGGCATGTCACTATGTATATCCACTTAACCAGATCATTCAGCAGTTTAAATATGAACAGAAATTACATTATCAAACCTTG
CTTGGCGAAATTTTACAGCAATTAAAATTTCCTAAAGTGCAAGCCATTGTACCTATGCCTATTTCTAAGCAACGTTTAAC
TGAACGTGGTTTCAATCAATCCTTACTACTCGCCAAACTTTTAAGTAAGCAACTAAAAATACCAGTTTGGCAACCTGTAC
AGCGCCTTAATGAACACTCTCAAAAAGGGTTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCTATC
AAGCAAGAAAAAAGACGTTACCGTCGTGTGCTTATTATTGATGATGTAATCACAACAGGAAGTTCAATTTACGCTTTGAG
TCAGGCCCTCAAACAGCTAGGATGCACATCTATTCATGCAAGTTGCCTAGCTGCTGCCTCATCTACATCTTATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

92.891

100

0.929
  comF Acinetobacter baumannii D1279779

91.943

100

0.919

Multiple sequence alignment