Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   GPW48_RS01225 Genome accession   NZ_LR738720
Coordinates   221744..222457 (+) Length   237 a.a.
NCBI ID   WP_024393394.1    Uniprot ID   -
Organism   Streptococcus suis isolate GD-0001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 216744..227457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS01215 treC 217811..219436 (-) 1626 WP_074389395.1 alpha,alpha-phosphotrehalase -
  GPW48_RS01220 treP 219517..221511 (-) 1995 WP_074389394.1 PTS system trehalose-specific EIIBC component -
  GPW48_RS01225 treR 221744..222457 (+) 714 WP_024393394.1 trehalose operon repressor Regulator
  GPW48_RS01230 - 222515..222826 (+) 312 WP_002935948.1 hypothetical protein -
  GPW48_RS01235 - 222823..223371 (+) 549 WP_002935945.1 CvpA family protein -
  GPW48_RS01245 mutS/mutS2 223866..226199 (+) 2334 WP_024405878.1 endonuclease MutS2 Machinery gene
  GPW48_RS01250 - 226223..226935 (+) 713 Protein_201 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27234.08 Da        Isoelectric Point: 6.7422

>NTDB_id=1006743 GPW48_RS01225 WP_024393394.1 221744..222457(+) (treR) [Streptococcus suis isolate GD-0001]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVFQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1006743 GPW48_RS01225 WP_024393394.1 221744..222457(+) (treR) [Streptococcus suis isolate GD-0001]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTGTTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTTGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTACGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511