Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABLB96_RS00260 Genome accession   NZ_CP157428
Coordinates   49110..49994 (-) Length   294 a.a.
NCBI ID   WP_348898393.1    Uniprot ID   A0AB39JY05
Organism   Acinetobacter sp. XH1741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 44110..54994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS00245 (ABLB96_00245) miaB 45959..47410 (+) 1452 WP_348898390.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ABLB96_RS00250 (ABLB96_00250) - 47448..48536 (+) 1089 WP_348898391.1 PhoH family protein -
  ABLB96_RS00255 (ABLB96_00255) ybeY 48546..49022 (+) 477 WP_348898392.1 rRNA maturation RNase YbeY -
  ABLB96_RS00260 (ABLB96_00260) tonB2 49110..49994 (-) 885 WP_348898393.1 energy transducer TonB Machinery gene
  ABLB96_RS00265 (ABLB96_00265) - 50229..50900 (+) 672 WP_348898394.1 hypothetical protein -
  ABLB96_RS00270 (ABLB96_00270) - 51058..51771 (+) 714 WP_348898395.1 DUF3108 domain-containing protein -
  ABLB96_RS00275 (ABLB96_00275) - 51844..52419 (+) 576 WP_348898396.1 xanthine phosphoribosyltransferase -
  ABLB96_RS00280 (ABLB96_00280) wrbA 52472..53074 (-) 603 WP_348898397.1 NAD(P)H:quinone oxidoreductase -
  ABLB96_RS00285 (ABLB96_00285) - 53355..54602 (+) 1248 WP_348898398.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33629.56 Da        Isoelectric Point: 8.3587

>NTDB_id=1006742 ABLB96_RS00260 WP_348898393.1 49110..49994(-) (tonB2) [Acinetobacter sp. XH1741]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHILVLLIHFAMPAPSEQSTKEIAVSIRPAEEAVKNADFLAQADQQGAGV
FREAHRMSSNAQTPMPNDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESKRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKLQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGHFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1006742 ABLB96_RS00260 WP_348898393.1 49110..49994(-) (tonB2) [Acinetobacter sp. XH1741]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGTGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTGGTATTGCTCATTCACTTTGCGATGCCTGCACCGTCTGAACAATCAACCAAAGAAATTG
CTGTATCTATTCGTCCTGCTGAGGAAGCAGTCAAAAATGCCGATTTTTTAGCTCAAGCAGACCAACAAGGTGCTGGGGTC
TTTCGAGAAGCTCATCGGATGTCTAGTAATGCTCAAACGCCTATGCCTAACGATGCTTCGACTGGAGAAGCGCAGTTAGA
AACCTTAGAAAAAGTACAACAACAAAGAGAACTTAAGTTCGAAGAAAAAGTATTGATGACAGTGTTAAGTTGGCAGAAAC
AAGCAGAGGAGAGCAAAAGAAAAAAAGAGCTTGAGCAATTACAAAGTCAGTTTCAGGCAAAAGCTGCAATGGTCGCAAGT
CTCGAGGCTCAATATTTACAACGTCAGCAAGATTTTAGCCGTCAGCAAAAAATAAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCATCAGCGGCGTATTTAGATAAGTTCCGTGAGAAAGTGGAACTTTACGGTAATCGTTATTATCCCGAAGAGG
CTAAACTGCAGCAGTTAAAAGGTGAAGTTCGCCTTATGGTTATCTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGGCATCCGGTTTTAGATGAAGCCGCAAAAGCATCGGTACGCCGTGGTGCTCCATTTGGTCATTTTGA
TGTCAATATGAAAGATATTTCGGAGCTTCGTATTATTCGTACTTGGCGATTTGATCCAGCTGAAGCTGAATTTGAAGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

93.878

100

0.939

Multiple sequence alignment