Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BB06_RS04155 Genome accession   NZ_CP157400
Coordinates   814423..814905 (+) Length   160 a.a.
NCBI ID   WP_029257897.1    Uniprot ID   A0AAU7NNF2
Organism   Pediococcus pentosaceus CGMCC 7049     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 803671..842618 814423..814905 within 0


Gene organization within MGE regions


Location: 803671..842618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BB06_RS04060 (BB06_04060) - 803671..804843 (-) 1173 WP_029257880.1 site-specific integrase -
  BB06_RS04065 (BB06_04065) - 804940..805242 (-) 303 WP_029257881.1 hypothetical protein -
  BB06_RS04070 (BB06_04070) - 805331..806449 (-) 1119 WP_029257882.1 DUF4236 domain-containing protein -
  BB06_RS04075 (BB06_04075) - 806566..807357 (-) 792 WP_051662216.1 DUF4352 domain-containing protein -
  BB06_RS04080 (BB06_04080) - 807414..808079 (-) 666 WP_036676072.1 S24 family peptidase -
  BB06_RS04085 (BB06_04085) - 808230..808493 (+) 264 WP_229573244.1 helix-turn-helix transcriptional regulator -
  BB06_RS04090 (BB06_04090) - 808490..808636 (+) 147 WP_155266533.1 hypothetical protein -
  BB06_RS04095 (BB06_04095) - 808633..808899 (-) 267 WP_029257886.1 hypothetical protein -
  BB06_RS04100 (BB06_04100) - 808969..809211 (+) 243 WP_029257887.1 hypothetical protein -
  BB06_RS04105 (BB06_04105) - 809216..809464 (+) 249 WP_029257888.1 hypothetical protein -
  BB06_RS04110 (BB06_04110) - 809551..809793 (+) 243 WP_029257889.1 hypothetical protein -
  BB06_RS04115 (BB06_04115) - 809867..810325 (+) 459 WP_218163244.1 helix-turn-helix domain-containing protein -
  BB06_RS04120 (BB06_04120) - 810326..810601 (+) 276 WP_029257891.1 helix-turn-helix domain-containing protein -
  BB06_RS04125 (BB06_04125) - 810609..810746 (+) 138 WP_349430946.1 hypothetical protein -
  BB06_RS04130 (BB06_04130) - 810930..811823 (+) 894 WP_029257892.1 DUF1351 domain-containing protein -
  BB06_RS04135 (BB06_04135) - 811823..812590 (+) 768 WP_051662221.1 ERF family protein -
  BB06_RS04140 (BB06_04140) - 812600..813472 (+) 873 WP_147628908.1 helix-turn-helix domain-containing protein -
  BB06_RS04145 (BB06_04145) - 813475..814176 (+) 702 WP_029257895.1 putative HNHc nuclease -
  BB06_RS04150 (BB06_04150) - 814145..814405 (+) 261 WP_029257896.1 hypothetical protein -
  BB06_RS04155 (BB06_04155) ssb 814423..814905 (+) 483 WP_029257897.1 single-stranded DNA-binding protein Machinery gene
  BB06_RS04160 (BB06_04160) - 815055..815372 (+) 318 WP_029257898.1 DeoR family transcriptional regulator -
  BB06_RS04165 (BB06_04165) - 815375..815542 (+) 168 WP_155266534.1 hypothetical protein -
  BB06_RS04170 (BB06_04170) - 815535..815732 (+) 198 WP_029257899.1 DUF6877 family protein -
  BB06_RS04175 (BB06_04175) - 815901..816236 (+) 336 WP_147628909.1 hypothetical protein -
  BB06_RS04180 (BB06_04180) - 816450..816893 (+) 444 WP_029257902.1 hypothetical protein -
  BB06_RS04190 (BB06_04190) - 817242..818066 (+) 825 WP_029257903.1 DUF5677 domain-containing protein -
  BB06_RS04195 (BB06_04195) - 818063..818239 (+) 177 WP_172643145.1 hypothetical protein -
  BB06_RS04200 (BB06_04200) - 818239..818739 (+) 501 WP_029257904.1 terminase small subunit -
  BB06_RS04205 (BB06_04205) - 818745..820109 (+) 1365 WP_253269729.1 PBSX family phage terminase large subunit -
  BB06_RS04210 (BB06_04210) - 820163..821659 (+) 1497 WP_080704992.1 phage portal protein -
  BB06_RS04215 (BB06_04215) - 821674..822789 (+) 1116 WP_036676103.1 phage minor capsid protein -
  BB06_RS04220 (BB06_04220) - 822889..823251 (+) 363 WP_051662226.1 phage scaffolding protein -
  BB06_RS04225 (BB06_04225) - 823244..823450 (+) 207 WP_051662228.1 phage scaffolding protein -
  BB06_RS04230 (BB06_04230) - 823463..824371 (+) 909 WP_029257908.1 hypothetical protein -
  BB06_RS04235 (BB06_04235) - 824439..824855 (+) 417 WP_029257909.1 hypothetical protein -
  BB06_RS04240 (BB06_04240) - 824852..825199 (+) 348 WP_029257910.1 putative minor capsid protein -
  BB06_RS04245 (BB06_04245) - 825199..825549 (+) 351 WP_029257911.1 minor capsid protein -
  BB06_RS04250 (BB06_04250) - 825536..825931 (+) 396 WP_029257912.1 minor capsid protein -
  BB06_RS04255 (BB06_04255) - 825935..826474 (+) 540 WP_051662230.1 hypothetical protein -
  BB06_RS04260 (BB06_04260) - 826548..826985 (+) 438 WP_029257914.1 hypothetical protein -
  BB06_RS04265 (BB06_04265) - 826992..827624 (+) 633 WP_029257915.1 Gp15 family bacteriophage protein -
  BB06_RS04270 (BB06_04270) - 827628..832868 (+) 5241 WP_029257916.1 tape measure protein -
  BB06_RS04275 (BB06_04275) - 832921..833718 (+) 798 WP_029257917.1 phage tail domain-containing protein -
  BB06_RS04280 (BB06_04280) - 833727..834863 (+) 1137 WP_051662234.1 phage tail protein -
  BB06_RS04285 (BB06_04285) - 834853..835179 (+) 327 WP_029257919.1 hypothetical protein -
  BB06_RS04290 (BB06_04290) - 835169..835465 (+) 297 WP_029257920.1 hypothetical protein -
  BB06_RS04295 (BB06_04295) - 835474..837726 (+) 2253 WP_349430947.1 BppU family phage baseplate upper protein -
  BB06_RS04300 (BB06_04300) - 837739..838044 (+) 306 WP_029257921.1 hypothetical protein -
  BB06_RS04305 (BB06_04305) - 838112..838267 (+) 156 WP_080704993.1 XkdX family protein -
  BB06_RS04310 (BB06_04310) - 838317..838601 (+) 285 WP_029257922.1 hypothetical protein -
  BB06_RS04315 (BB06_04315) - 838646..838840 (+) 195 Protein_823 phage holin -
  BB06_RS04320 (BB06_04320) - 838824..839948 (+) 1125 WP_080704994.1 peptidoglycan recognition family protein -
  BB06_RS04325 (BB06_04325) - 841242..842618 (+) 1377 WP_029257924.1 amino acid permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18266.82 Da        Isoelectric Point: 5.2253

>NTDB_id=1006659 BB06_RS04155 WP_029257897.1 814423..814905(+) (ssb) [Pediococcus pentosaceus CGMCC 7049]
MINRTVLVGRLTRDPELKYTNSGRAVASFNIAVNRQFTNSQNEREADFINCVIWNKTAENFCNFTHKGSLVGIDGRIQTR
SYDNQQGTRIFVTEVVAENFSLLESKNSNQNNQSEQFEQNRPQNNGQNYQNQQNGQSSPSRNPNDPFNSTPDIKDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1006659 BB06_RS04155 WP_029257897.1 814423..814905(+) (ssb) [Pediococcus pentosaceus CGMCC 7049]
ATGATTAATCGAACTGTTTTAGTTGGCCGGTTGACGCGTGATCCAGAATTGAAATACACCAACAGTGGAAGGGCGGTAGC
TAGTTTTAACATAGCCGTTAACCGTCAATTTACAAATTCACAGAACGAGCGCGAAGCGGACTTTATTAACTGCGTTATTT
GGAATAAAACGGCGGAAAATTTTTGTAACTTCACTCACAAGGGTTCACTAGTTGGCATTGACGGACGGATTCAAACTCGT
TCATACGATAATCAGCAAGGTACACGAATTTTTGTTACTGAGGTAGTAGCTGAGAACTTCTCGCTGCTTGAATCTAAAAA
CAGCAATCAAAATAACCAGAGTGAACAATTTGAACAAAATAGACCTCAAAATAACGGACAAAATTACCAGAATCAACAAA
ATGGTCAATCATCACCTAGTAGAAATCCTAACGACCCATTTAATAGCACACCGGATATCAAGGATGACGATTTACCGTTC
TAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.625
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.556

Multiple sequence alignment