Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ABKJ37_RS14160 Genome accession   NZ_CP157386
Coordinates   2967913..2969604 (-) Length   563 a.a.
NCBI ID   WP_348920733.1    Uniprot ID   -
Organism   Enterococcus rotai strain CMTB-CA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2962913..2974604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ37_RS14130 ftsL 2963968..2964369 (-) 402 WP_348920731.1 cell division protein FtsL -
  ABKJ37_RS14135 rsmH 2964386..2965345 (-) 960 WP_348920732.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  ABKJ37_RS14140 mraZ 2965359..2965790 (-) 432 WP_010762855.1 division/cell wall cluster transcriptional repressor MraZ -
  ABKJ37_RS14145 - 2966071..2966442 (-) 372 WP_086280127.1 DUF3397 domain-containing protein -
  ABKJ37_RS14150 - 2966627..2967583 (+) 957 WP_208926955.1 magnesium transporter CorA family protein -
  ABKJ37_RS14155 - 2967655..2967768 (+) 114 WP_086280105.1 DUF4044 domain-containing protein -
  ABKJ37_RS14160 recN 2967913..2969604 (-) 1692 WP_348920733.1 DNA repair protein RecN Machinery gene
  ABKJ37_RS14165 - 2969622..2970071 (-) 450 WP_086280099.1 ArgR family transcriptional regulator -
  ABKJ37_RS14170 - 2970357..2971883 (+) 1527 WP_348920734.1 NAD(P)-dependent oxidoreductase -
  ABKJ37_RS14175 - 2971930..2972745 (-) 816 WP_086280096.1 TlyA family RNA methyltransferase -
  ABKJ37_RS14180 - 2972762..2973649 (-) 888 WP_348920735.1 polyprenyl synthetase family protein -
  ABKJ37_RS14185 - 2973649..2973888 (-) 240 WP_086280090.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63966.77 Da        Isoelectric Point: 4.7194

>NTDB_id=1006579 ABKJ37_RS14160 WP_348920733.1 2967913..2969604(-) (recN) [Enterococcus rotai strain CMTB-CA6]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGASKCTLEGLFTMPKNQELIALL
DELGIETDEESIVIQRDISTSGKNVCRVNGRIINIANLRKVGEFLVDIHGQNEHQELMQSEKHLGMLDDFGGKELLKIKE
QYEGSYSEYRMIEKKVRNRQKNEKEFAQRMDMLQFQSDEIAAAELVLGEEEQLIEERNKLGNFQKIADALATSYSAINGD
SDSSLDKIGYAMNELLSIETLDPEYKAISEAVQNSYYLLQEASGDLSRHIDSLELDENRLNDVETRLELIRQMKRKYGES
IESILDYYQEITRELADADFLEGRTGELETLLIEKRNQVVENGLKLREIRKRIAKKLEKNILRELKELYMERTVFDIRFT
ELAEKQFTEEGLDQVEFYITTNPGEPLKPLVRVASGGELSRVMLALKTIFSKSQGITSIVFDEVDTGVSGRVAQAIADKI
YQISKNSQVLCITHLPQVAAVADYQYFIEKEIIGERTETKVRRLKQNERVAEIARMLSGSEITKLTTEHAKELLNMAENE
RRH

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1006579 ABKJ37_RS14160 WP_348920733.1 2967913..2969604(-) (recN) [Enterococcus rotai strain CMTB-CA6]
ATGCTGCAAGAACTTTCTGTAAAGAATTTTGCGATCATATCTTCGCTGCAATTAGAATTTCAGATGGGGATGACGGTTTT
AACCGGGGAGACCGGAGCCGGTAAATCAATCATTATTGATGCAATGGGATTGCTGACAGGTGGTCGAGGATCAAGTGATT
ATATCCGTCAAGGTGCTTCTAAGTGCACGCTGGAAGGGTTGTTTACGATGCCTAAAAACCAAGAATTGATTGCTCTTTTA
GATGAATTAGGGATCGAAACAGATGAAGAGTCGATTGTGATTCAACGTGATATATCAACTTCAGGCAAAAATGTTTGCCG
AGTTAATGGTCGGATCATTAATATTGCGAATTTACGTAAAGTCGGTGAATTTTTAGTTGATATCCATGGTCAAAACGAAC
ACCAAGAACTAATGCAAAGTGAGAAACATCTAGGTATGTTAGATGATTTTGGTGGGAAAGAGTTACTAAAAATAAAAGAG
CAGTATGAAGGAAGCTATTCAGAATACCGCATGATCGAAAAGAAAGTCAGAAATCGTCAAAAAAATGAAAAAGAATTTGC
TCAGCGTATGGATATGTTGCAATTCCAAAGTGATGAAATCGCGGCAGCCGAACTTGTTTTGGGTGAAGAAGAACAATTGA
TTGAAGAACGCAACAAGCTGGGGAATTTCCAGAAAATCGCTGACGCCTTAGCAACAAGCTATAGTGCAATCAATGGAGAT
AGTGACAGTAGTTTAGATAAAATAGGATATGCTATGAATGAGTTGTTATCAATCGAGACACTAGATCCAGAATACAAGGC
AATATCAGAAGCTGTTCAAAATAGTTATTACCTTTTACAAGAGGCCAGTGGCGATTTATCAAGACATATCGATAGTTTAG
AGTTAGATGAAAATCGACTAAATGATGTAGAAACAAGGCTGGAATTGATTCGACAAATGAAAAGAAAATACGGAGAATCT
ATTGAATCAATTTTGGACTATTATCAAGAAATCACTCGTGAACTAGCCGATGCTGATTTCTTAGAAGGACGAACTGGTGA
ACTGGAAACATTGTTGATCGAAAAGCGGAATCAAGTGGTCGAAAACGGTTTGAAACTACGAGAGATCCGAAAAAGAATTG
CAAAAAAACTGGAAAAAAATATTTTGAGGGAATTAAAAGAGCTGTACATGGAACGAACAGTGTTTGATATTCGTTTTACT
GAATTAGCAGAAAAGCAGTTTACTGAAGAAGGTTTAGATCAAGTTGAATTTTATATCACAACAAACCCAGGTGAACCGCT
GAAACCTTTAGTTAGAGTGGCATCAGGCGGGGAACTTTCTCGAGTGATGTTGGCGCTGAAGACAATTTTTTCTAAATCAC
AAGGAATCACTAGCATCGTTTTCGATGAGGTCGATACAGGCGTGAGCGGCCGCGTTGCACAAGCAATCGCAGATAAAATT
TATCAAATCTCCAAAAACTCACAAGTGCTATGTATTACGCATCTTCCTCAAGTGGCAGCGGTAGCAGATTATCAATATTT
TATTGAAAAAGAAATCATTGGCGAGCGGACAGAGACGAAAGTTAGAAGACTGAAACAAAATGAACGCGTGGCAGAAATTG
CGCGTATGCTTTCTGGAAGTGAGATTACGAAATTAACAACAGAGCATGCAAAAGAACTATTGAACATGGCGGAGAATGAA
CGCAGACATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.348

100

0.513

Multiple sequence alignment