Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABKJ37_RS00100 Genome accession   NZ_CP157386
Coordinates   21366..21917 (+) Length   183 a.a.
NCBI ID   WP_348921354.1    Uniprot ID   -
Organism   Enterococcus rotai strain CMTB-CA6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 16366..26917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ37_RS00080 menH 17161..17991 (+) 831 WP_348921351.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase -
  ABKJ37_RS00085 menC 18013..19122 (+) 1110 WP_348921352.1 o-succinylbenzoate synthase -
  ABKJ37_RS00090 - 19181..20707 (-) 1527 WP_348921353.1 acyl-CoA synthetase -
  ABKJ37_RS00095 rpsF 21015..21317 (+) 303 WP_010766612.1 30S ribosomal protein S6 -
  ABKJ37_RS00100 ssb 21366..21917 (+) 552 WP_348921354.1 single-stranded DNA-binding protein Machinery gene
  ABKJ37_RS00105 rpsR 21943..22182 (+) 240 WP_010762117.1 30S ribosomal protein S18 -
  ABKJ37_RS00110 - 22358..24334 (+) 1977 WP_348921355.1 DHH family phosphoesterase -
  ABKJ37_RS00115 rplI 24370..24822 (+) 453 WP_069653499.1 50S ribosomal protein L9 -
  ABKJ37_RS00120 dnaB 24964..26334 (+) 1371 WP_208929797.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20101.71 Da        Isoelectric Point: 4.4762

>NTDB_id=1006551 ABKJ37_RS00100 WP_348921354.1 21366..21917(+) (ssb) [Enterococcus rotai strain CMTB-CA6]
MINNVVLVGRLTKDPDLRYTSSGSAVATFTLAVNRNFTNANGNREADFINCVIWRKPAETMANYARKGTLLGVTGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRQTTDGSDSTPSYNAGGGNSFQPQNNNFSGQNNFNQSSSQSNNNGMPDF
DRESDPFGGTGSTIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1006551 ABKJ37_RS00100 WP_348921354.1 21366..21917(+) (ssb) [Enterococcus rotai strain CMTB-CA6]
ATGATTAACAACGTTGTATTAGTTGGAAGACTAACAAAAGATCCAGATTTACGATATACATCTAGTGGTTCTGCGGTTGC
GACATTTACTTTAGCGGTAAACCGTAACTTTACGAATGCAAATGGAAATCGTGAAGCAGATTTTATTAACTGTGTGATTT
GGCGTAAACCTGCTGAAACAATGGCAAACTATGCGCGTAAAGGTACATTATTAGGCGTAACTGGTCGTATTCAAACTAGA
AATTATGAGAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTTTGTGAGAATTTCCAGTTGTTAGAGTCTCGTTC
TGCTTCAGAACAAAGACAAACAACAGATGGATCAGATTCAACACCTAGCTATAATGCTGGTGGCGGAAATAGTTTCCAAC
CACAGAACAATAATTTTTCAGGACAAAACAATTTTAATCAATCATCCTCTCAGTCTAACAATAACGGTATGCCTGATTTC
GATAGAGAGTCTGATCCATTTGGTGGGACAGGTTCGACTATTGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.656

100

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.08

100

0.563

Multiple sequence alignment