Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ABDM36_RS12350 Genome accession   NZ_CP157384
Coordinates   2712787..2713431 (+) Length   214 a.a.
NCBI ID   WP_001188316.1    Uniprot ID   Q9KUW3
Organism   Vibrio cholerae C6706     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2707787..2718431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDM36_RS12335 - 2708374..2709813 (-) 1440 WP_000743253.1 PilN domain-containing protein -
  ABDM36_RS12340 csrD 2709826..2711838 (-) 2013 WP_001918202.1 RNase E specificity factor CsrD -
  ABDM36_RS12345 ssb 2711962..2712495 (-) 534 WP_000168289.1 single-stranded DNA-binding protein Machinery gene
  ABDM36_RS12350 qstR 2712787..2713431 (+) 645 WP_001188316.1 LuxR C-terminal-related transcriptional regulator Regulator
  ABDM36_RS12355 galU 2713604..2714476 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ABDM36_RS12360 uvrA 2714632..2717454 (+) 2823 WP_000357696.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24736.58 Da        Isoelectric Point: 9.6461

>NTDB_id=1006540 ABDM36_RS12350 WP_001188316.1 2712787..2713431(+) (qstR) [Vibrio cholerae C6706]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1006540 ABDM36_RS12350 WP_001188316.1 2712787..2713431(+) (qstR) [Vibrio cholerae C6706]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAGTTGAATCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTAAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KUW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523

Multiple sequence alignment