Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ABDM36_RS09310 Genome accession   NZ_CP157384
Coordinates   2043832..2045199 (-) Length   455 a.a.
NCBI ID   WP_411852850.1    Uniprot ID   -
Organism   Vibrio cholerae C6706     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2038832..2050199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDM36_RS09275 moaE 2039555..2040007 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  ABDM36_RS09280 moaD 2040009..2040254 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  ABDM36_RS09285 moaC 2040251..2040730 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  ABDM36_RS09290 moaB 2040741..2041253 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ABDM36_RS09295 moaA 2041313..2042302 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  ABDM36_RS09300 - 2042608..2043498 (+) 891 WP_000061070.1 YvcK family protein -
  ABDM36_RS09305 luxU 2043487..2043828 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ABDM36_RS09310 luxO 2043832..2045199 (-) 1368 WP_411852850.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ABDM36_RS09315 uvrB 2045630..2047660 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  ABDM36_RS09325 rsxA 2048542..2049123 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ABDM36_RS09330 rsxB 2049123..2049710 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50869.15 Da        Isoelectric Point: 5.5755

>NTDB_id=1006528 ABDM36_RS09310 WP_411852850.1 2043832..2045199(-) (luxO) [Vibrio cholerae C6706]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLSF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1006528 ABDM36_RS09310 WP_411852850.1 2043832..2045199(-) (luxO) [Vibrio cholerae C6706]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTAGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment