Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   ABKP85_RS12245 Genome accession   NZ_CP157379
Coordinates   2387775..2388266 (-) Length   163 a.a.
NCBI ID   WP_011836065.1    Uniprot ID   A2RNU7
Organism   Lactococcus cremoris strain NZ3900     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2382775..2393266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKP85_RS12245 (ABKP85_12210) comX 2387775..2388266 (-) 492 WP_011836065.1 sigma-70 family RNA polymerase sigma factor Regulator
  ABKP85_RS12250 (ABKP85_12215) ezrA 2388531..2390261 (-) 1731 WP_011836066.1 septation ring formation regulator EzrA -
  ABKP85_RS12255 (ABKP85_12220) tsf 2390466..2391494 (-) 1029 WP_011677206.1 translation elongation factor Ts -
  ABKP85_RS12260 (ABKP85_12225) rpsB 2391616..2392383 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19695.45 Da        Isoelectric Point: 6.1662

>NTDB_id=1006485 ABKP85_RS12245 WP_011836065.1 2387775..2388266(-) (comX) [Lactococcus cremoris strain NZ3900]
MTYYLEENEFEGLFSGMKPIIRKLMKQIRIKAWDIEDYYQEGMIILHHLLEENHPSTNIYTKFKVKYHQHLIDELRHSYA
KKRLHDHFVGLDIYECSDWIDAGGSTPESELVFNHLLAEVYEGLSAHYQELLVRQMRGEELTRMERYRLREKIKNILFSR
DDD

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1006485 ABKP85_RS12245 WP_011836065.1 2387775..2388266(-) (comX) [Lactococcus cremoris strain NZ3900]
ATGACATATTACCTGGAAGAAAATGAATTCGAAGGTTTATTTTCTGGAATGAAACCAATCATCAGAAAATTGATGAAACA
AATTCGAATCAAAGCATGGGACATAGAGGATTATTATCAAGAAGGAATGATTATTTTGCATCACCTTTTAGAAGAAAATC
ACCCATCCACTAATATTTATACAAAGTTCAAAGTAAAATATCATCAACATTTGATTGATGAACTACGCCATAGCTACGCC
AAAAAACGGCTTCATGACCATTTTGTAGGTCTGGACATTTATGAATGTTCGGACTGGATAGATGCAGGAGGAAGTACCCC
TGAAAGCGAGCTTGTGTTCAATCATCTTTTAGCAGAAGTTTATGAAGGATTGAGCGCCCACTATCAGGAATTACTCGTGC
GTCAAATGAGAGGAGAAGAACTCACGCGAATGGAACGCTATCGGCTAAGAGAAAAAATCAAAAATATACTATTTTCTCGA
GATGATGATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2RNU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. cremoris KW2

98.773

100

0.988
  comX Lactococcus lactis subsp. lactis strain DGCC12653

75.46

100

0.755

Multiple sequence alignment