Detailed information NTG1006446

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: PAKAF_RS00100
• Genome accession: NZ_LR657304
• Coordinates: 21222..22247 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa PAK
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16222..27247

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAKAF_RS00075 (PAKAF_00015)	-	16410..16727 (-)	318	WP_003120685.1	tetratricopeptide repeat protein	-
PAKAF_RS00080 (PAKAF_00016)	trkA	16876..18249 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
PAKAF_RS00085 (PAKAF_00017)	rsmB	18277..19581 (-)	1305	WP_016252820.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
PAKAF_RS00090 (PAKAF_00018)	fmt	19578..20522 (-)	945	WP_016252821.1	methionyl-tRNA formyltransferase	-
PAKAF_RS00095 (PAKAF_00019)	def	20577..21083 (-)	507	WP_003107059.1	peptide deformylase	-
PAKAF_RS00100 (PAKAF_00020)	tsaP	21222..22247 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PAKAF_RS00105 (PAKAF_00021)	dprA	22382..23470 (+)	1089	WP_003458411.1	DNA-processing protein DprA	Machinery gene
PAKAF_RS00110 (PAKAF_00022)	-	23511..24068 (+)	558	WP_003097300.1	Sua5/YciO/YrdC/YwlC family protein	-
PAKAF_RS00115 (PAKAF_00023)	-	24078..25055 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
PAKAF_RS00120 (PAKAF_00024)	hemF	25246..26163 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
PAKAF_RS00125 (PAKAF_00025)	aroE	26221..27045 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=1006446 PAKAF_RS00100 WP_003097294.1 21222..22247(+) (tsaP) [Pseudomonas aeruginosa PAK]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=1006446 PAKAF_RS00100 WP_003097294.1 21222..22247(+) (tsaP) [Pseudomonas aeruginosa PAK]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCACATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393