Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PAKAF_RS00105 Genome accession   NZ_LR657304
Coordinates   22382..23470 (+) Length   362 a.a.
NCBI ID   WP_003458411.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa PAK     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17382..28470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKAF_RS00085 (PAKAF_00017) rsmB 18277..19581 (-) 1305 WP_016252820.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PAKAF_RS00090 (PAKAF_00018) fmt 19578..20522 (-) 945 WP_016252821.1 methionyl-tRNA formyltransferase -
  PAKAF_RS00095 (PAKAF_00019) def 20577..21083 (-) 507 WP_003107059.1 peptide deformylase -
  PAKAF_RS00100 (PAKAF_00020) tsaP 21222..22247 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PAKAF_RS00105 (PAKAF_00021) dprA 22382..23470 (+) 1089 WP_003458411.1 DNA-processing protein DprA Machinery gene
  PAKAF_RS00110 (PAKAF_00022) - 23511..24068 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  PAKAF_RS00115 (PAKAF_00023) - 24078..25055 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  PAKAF_RS00120 (PAKAF_00024) hemF 25246..26163 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PAKAF_RS00125 (PAKAF_00025) aroE 26221..27045 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  PAKAF_RS00130 (PAKAF_00026) - 27156..28142 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37689.17 Da        Isoelectric Point: 7.0741

>NTDB_id=1006447 PAKAF_RS00105 WP_003458411.1 22382..23470(+) (dprA) [Pseudomonas aeruginosa PAK]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPASAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGRDVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=1006447 PAKAF_RS00105 WP_003458411.1 22382..23470(+) (dprA) [Pseudomonas aeruginosa PAK]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCAGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGATGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.662

98.066

0.428
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.673

99.724

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

38

96.685

0.367
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367
  dprA Glaesserella parasuis strain SC1401

46.503

79.006

0.367

Multiple sequence alignment