Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ABHF33_RS09805 Genome accession   NZ_CP157355
Coordinates   2060861..2062090 (-) Length   409 a.a.
NCBI ID   WP_348943794.1    Uniprot ID   A0AAU7F5S3
Organism   Chitinibacter sp. FCG-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2055861..2067090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF33_RS09770 (ABHF33_09770) - 2056395..2056928 (-) 534 WP_348943787.1 tail fiber protein -
  ABHF33_RS09775 (ABHF33_09775) - 2056938..2057456 (-) 519 WP_348943788.1 tail fiber protein -
  ABHF33_RS09780 (ABHF33_09780) - 2057449..2058033 (-) 585 WP_348943789.1 GNAT family N-acetyltransferase -
  ABHF33_RS09785 (ABHF33_09785) - 2058038..2058517 (-) 480 WP_348943790.1 hypothetical protein -
  ABHF33_RS09790 (ABHF33_09790) - 2058670..2059002 (-) 333 WP_348943791.1 hypothetical protein -
  ABHF33_RS09795 (ABHF33_09795) ftsX 2059043..2059945 (-) 903 WP_348943792.1 permease-like cell division protein FtsX -
  ABHF33_RS09800 (ABHF33_09800) ftsE 2059958..2060611 (-) 654 WP_348943793.1 cell division ATP-binding protein FtsE -
  ABHF33_RS09805 (ABHF33_09805) pilA 2060861..2062090 (-) 1230 WP_348943794.1 signal recognition particle-docking protein FtsY Machinery gene
  ABHF33_RS09810 (ABHF33_09810) rsmD 2062156..2062728 (+) 573 WP_348943795.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABHF33_RS09815 (ABHF33_09815) - 2062817..2063068 (+) 252 WP_348943796.1 YfhL family 4Fe-4S dicluster ferredoxin -
  ABHF33_RS09820 (ABHF33_09820) - 2063219..2064280 (+) 1062 WP_348943797.1 tetratricopeptide repeat protein -
  ABHF33_RS09825 (ABHF33_09825) - 2064547..2065497 (+) 951 WP_348943798.1 sodium-dependent bicarbonate transport family permease -
  ABHF33_RS09830 (ABHF33_09830) - 2065507..2065809 (+) 303 WP_157314434.1 transcriptional regulator -
  ABHF33_RS09835 (ABHF33_09835) - 2065893..2066642 (+) 750 WP_348943799.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 43439.69 Da        Isoelectric Point: 5.3507

>NTDB_id=1006246 ABHF33_RS09805 WP_348943794.1 2060861..2062090(-) (pilA) [Chitinibacter sp. FCG-7]
MFSFFKKKKPADTVAEQDLAPAQVTSAAQTAQAEQAAQATEAEASTAPAMPSTPEAPAQAAVTEYSAAVVAKPEVLPATP
EPAKPTEQYIETDPAKLGNTDQPQERPKLSWADRLKMGLAKTRDKLGKSLASVFGGGKIDDDLYDELETVLLTADMGVDA
TQHLLKDVRERVSLKGLKDPNELKGALKDSLVELIQPLQIPLNVEGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQGKSV
LLAAGDTFRAAAREQLVVWGERNGVHVIAQESGDAAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVVQ
KADPTGPHEIMLVLDANTGQNALAQTKSFDDALGLTGLVLTKLDGTAKGGVIAAIAKNRPVPLRFIGVGETIDDLRPFVA
KDYIDALFE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1006246 ABHF33_RS09805 WP_348943794.1 2060861..2062090(-) (pilA) [Chitinibacter sp. FCG-7]
ATGTTTAGTTTTTTCAAAAAAAAGAAGCCCGCTGACACCGTAGCGGAGCAAGATTTAGCGCCTGCACAGGTCACATCCGC
AGCACAGACCGCGCAAGCAGAACAAGCCGCGCAGGCCACAGAGGCCGAAGCTTCCACCGCGCCCGCCATGCCAAGTACGC
CTGAAGCCCCAGCACAAGCCGCTGTTACCGAGTACAGCGCCGCCGTCGTCGCAAAACCAGAGGTATTGCCCGCTACGCCA
GAGCCAGCAAAGCCTACAGAGCAATACATCGAGACTGATCCAGCCAAACTGGGCAACACCGATCAACCGCAAGAGCGCCC
CAAGCTCTCCTGGGCCGACCGGCTGAAAATGGGTCTGGCCAAAACCCGCGATAAATTGGGCAAAAGTCTGGCCAGCGTAT
TTGGCGGCGGCAAGATCGACGACGATTTGTACGACGAGCTGGAAACCGTGCTGCTGACCGCCGATATGGGCGTTGATGCG
ACACAACATTTGCTCAAAGACGTGCGTGAGCGCGTGTCACTCAAAGGCCTGAAAGACCCGAACGAGCTCAAAGGCGCGCT
GAAAGACAGCCTGGTTGAGCTGATCCAGCCACTGCAGATCCCGCTCAATGTCGAAGGCCACAAGCCGTTTATTCTGATGG
TGGCGGGCGTCAATGGCGCGGGTAAAACCACGTCGATTGGCAAGCTGGCCAAATATTTCCAAAGCCAGGGCAAGAGCGTA
TTGCTCGCGGCGGGCGATACTTTCCGCGCCGCAGCGCGCGAGCAGCTGGTGGTCTGGGGCGAGCGCAATGGCGTGCACGT
AATTGCACAGGAATCAGGCGATGCCGCCGCCGTGGCGTTTGACGCGGTGAATGCGGCCAAGGCGCGTGGCATTGATGTGG
TGATTGTCGATACAGCGGGCCGTTTGCCAACGCAATTGCATTTGATGGAAGAAATCAAAAAAGTGAAACGCGTGGTGCAA
AAAGCCGACCCGACTGGCCCGCACGAAATCATGCTGGTGCTCGACGCCAACACTGGCCAGAACGCCTTGGCGCAAACCAA
ATCATTTGACGACGCGCTGGGCCTAACTGGCCTGGTGCTGACCAAGCTCGATGGCACCGCCAAAGGCGGCGTGATCGCGG
CGATTGCCAAAAATCGCCCGGTGCCACTGCGCTTTATCGGCGTGGGCGAAACCATCGACGATCTGCGCCCCTTTGTCGCC
AAAGATTATATTGACGCGCTGTTTGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(210-408)

SRP54-type protein, helical bundle domain (SRP54_N)

(125-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

60.095

100

0.619

Multiple sequence alignment