Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABG082_RS16410 Genome accession   NZ_CP157353
Coordinates   3169492..3170181 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. BS1807G30     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3164492..3175181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS16375 (ABG082_16375) - 3164578..3165060 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ABG082_RS16380 (ABG082_16380) flgM 3165079..3165342 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABG082_RS16385 (ABG082_16385) - 3165422..3165841 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ABG082_RS16390 (ABG082_16390) comFC 3165898..3166584 (-) 687 WP_216942854.1 ComF family protein Machinery gene
  ABG082_RS16395 (ABG082_16395) - 3166581..3166874 (-) 294 WP_008348267.1 competence protein ComFB -
  ABG082_RS16400 (ABG082_16400) comFA 3166939..3168066 (-) 1128 WP_234898350.1 DEAD/DEAH box helicase Machinery gene
  ABG082_RS16405 (ABG082_16405) - 3168438..3169280 (-) 843 WP_144683538.1 DegV family protein -
  ABG082_RS16410 (ABG082_16410) degU 3169492..3170181 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ABG082_RS16415 (ABG082_16415) degS 3170246..3171421 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  ABG082_RS16420 (ABG082_16420) - 3171643..3172311 (+) 669 WP_017357860.1 YigZ family protein -
  ABG082_RS16425 (ABG082_16425) - 3172296..3173393 (+) 1098 WP_007499958.1 LCP family protein -
  ABG082_RS16430 (ABG082_16430) - 3173431..3174498 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=1006193 ABG082_RS16410 WP_008348273.1 3169492..3170181(-) (degU) [Bacillus sp. BS1807G30]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1006193 ABG082_RS16410 WP_008348273.1 3169492..3170181(-) (degU) [Bacillus sp. BS1807G30]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGACACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment