Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABG082_RS14695 Genome accession   NZ_CP157353
Coordinates   2828929..2829570 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus sp. BS1807G30     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823929..2834570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS14660 (ABG082_14660) - 2825057..2825488 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  ABG082_RS14665 (ABG082_14665) - 2825488..2825829 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  ABG082_RS14670 (ABG082_14670) - 2825822..2827300 (+) 1479 WP_206115691.1 Na+/H+ antiporter subunit D -
  ABG082_RS14675 (ABG082_14675) - 2827307..2827786 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  ABG082_RS14680 (ABG082_14680) - 2827786..2828067 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  ABG082_RS14685 (ABG082_14685) mnhG 2828051..2828425 (+) 375 WP_035701201.1 monovalent cation/H(+) antiporter subunit G -
  ABG082_RS14690 (ABG082_14690) - 2828516..2828905 (-) 390 WP_282833454.1 hotdog fold thioesterase -
  ABG082_RS14695 (ABG082_14695) comA 2828929..2829570 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  ABG082_RS14700 (ABG082_14700) comP 2829651..2831957 (-) 2307 WP_282833453.1 ATP-binding protein Regulator
  ABG082_RS14705 (ABG082_14705) comX 2831971..2832141 (-) 171 WP_017358941.1 competence pheromone ComX -
  ABG082_RS14710 (ABG082_14710) - 2832119..2833042 (-) 924 WP_282833452.1 polyprenyl synthetase family protein -
  ABG082_RS14715 (ABG082_14715) degQ 2833194..2833334 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ABG082_RS14720 (ABG082_14720) - 2833840..2834193 (+) 354 WP_017358939.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1006185 ABG082_RS14695 WP_007500477.1 2828929..2829570(-) (comA) [Bacillus sp. BS1807G30]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1006185 ABG082_RS14695 WP_007500477.1 2828929..2829570(-) (comA) [Bacillus sp. BS1807G30]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCAATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment